Zeitschriftenartikel (1006)

2011
Zeitschriftenartikel
Krobath, H.; Rózycki, B.; Lipowsky, R.; Weikl, T. R.: Line tension and stability of domains in cell-adhesion zones mediated by long and short receptor-ligand complexes. PLoS One 6 (8), e23284 (2011)
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Kusumaatmaja, H.; Lipowsky, R.: Droplet-induced budding transitions of membranes. Soft Matter 7 (15), S. 6914 - 6919 (2011)
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Lei, W.; Portehault, D.; Dimova, R.; Antonietti, M.: Boron carbon nitride nanostructures from salt: tunable water-soluble phosphors. Journal of the American Chemical Society 133 (18), S. 7121 - 7127 (2011)
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Li, Y. H.; Lipowsky, R.; Dimova, R.: Membrane nanotubes induced by aqueous phase separation and stabilized by spontaneous curvature. Proceedings of the National Academy of Sciences of the United States of America 108 (12), S. 4731 - 4736 (2011)
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Menche, J.; Valleriani, A.; Lipowsky, R.: Sequences of phase transitions in Ising models on correlated networks. Physical Review E 83 (6), 061129 (2011)
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Mertins, O.; Dimova, R.: Binding of chitosan to phospholipid vesicles studied with isothermal titration calorimetry. Langmuir 27 (9), S. 5506 - 5515 (2011)
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Nagar, A.; Valleriani, A.; Lipowsky, R.: Translation by ribosomes with mRNA degradation: exclusion processes on aging tracks. Journal of Statistical Physics 145 (5), S. 1385 - 1404 (2011)
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Rading, M. M.; Engel, T. A.; Lipowsky, R.; Valleriani, A.: Stationary size distributions of growing cells with binary and multiple cell division. Journal of Statistical Physics 145 (1), S. 1 - 22 (2011)
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Sahoo, M.; Klumpp, S.: Transcriptional proofreading in dense RNA polymerase traffic. EPL 96 (6), 60004 (2011)
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Sahoo, M.; Lahiri, S.; Jayannavar, A. M.: Fluctuation theorems and atypical trajectories. Journal of Physics A 44 (20), 205001 (2011)
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Schmoller, K. M.; Niedermayer, T.; Zensen, C.; Wurm, C.; Bausch, A. R.: Fragmentation is crucial for the steady-state dynamics of actin filaments. Biophysical Journal 101 (4), S. 803 - 808 (2011)
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Schuster, M.; Lipowsky, R.; Assmann, M. A.; Lenz, P.; Steinberg, G.: Transient binding of dynein controls bidirectional long-range motility of early endosomes. Proceedings of the National Academy of Sciences of the United States of America 108 (9), S. 3618 - 3623 (2011)
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Shchelokovskyy, P.; Tristram-Nagle, S.; Dimova, R.: Effect of the HIV-1 fusion peptide on the mechanical properties and leaflet coupling of lipid bilayers. New Journal of Physics 13, 025004 (2011)
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Valleriani, A.; Zhang, G.; Nagar, A.; Ignatova, Z.; Lipowsky, R.: Length-dependent translation of messenger RNA by ribosomes. Physical Review E 83 (4), 042903 (2011)
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von Deuster, C. I. E.; Knecht, V.: Competing interactions for antimicrobial selectivity based on charge complementarity. Biochimica et Biophysica Acta-Biomembranes 1808 (12), S. 2867 - 2876 (2011)
2010
Zeitschriftenartikel
Czech, A.; Fedyunin, I.; Zhang, G.; Ignatova, Z.: Silent mutations in sight: co-variations in tRNA abundance as a key to unravel consequences of silent mutations. Molecular BioSystems 6 (10), S. 1767 - 1772 (2010)
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Gracià, R. S.; Bezlyepkina, N.; Knorr, R. L.; Lipowsky, R.; Dimova, R.: Effect of cholesterol on the rigidity of saturated and unsaturated membranes: fluctuation and electrodeformation analysis of giant vesicles. Soft Matter 6 (7), S. 1472 - 1482 (2010)
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Guo, K. K.; Shillcock, J.; Lipowsky, R.: Treadmilling of actin filaments via Brownian dynamics simulations. The Journal of Chemical Physics 133 (15), 155105 (2010)
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Gutjahr, P.; Lipowsky, R.; Kierfeld, J.: Semiflexible polymer rings on topographically and chemically structured surfaces. Soft Matter 6 (21), S. 5461 - 5475 (2010)
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Hausmann, R.; Kuppe, C.; Egger, H.; Schweda, F.; Knecht, V.; Elger, M.; Menzel, S.; Somers, D.; Braun, G.; Fuss, A. et al.; Uhlig, S.; Kriz, W.; Tanner, G.; Floege, J.; Moeller, M. J.: Electrical forces determine glomerular permeability. Journal of the American Society of Nephrology 21 (12), S. 2053 - 2058 (2010)
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Katsir, Y.; Shapira, Y.; Mastai, Y.; Dimova, R.; Ben-Jacob, E.: Entropic effects and slow kinetics revealed in titrations of D2O-H2O Solutions with Different D/H Ratios. The Journal of Physical Chemistry B 114 (17), S. 5755 - 5763 (2010)
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Kierfeld, J.; Baczynski, K.; Gutjahr, P.; Kühne, T.; Lipowsky, R.: Modelling semiflexible polymers: shape analysis, buckling instabilities, and force generation. Soft Matter 6 (22), S. 5764 - 5769 (2010)
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Kittner, M.; Knecht, V.: Disordered versus fibril-like amyloid beta (25-35) dimers in water: structure and thermodynamics. The Journal of Physical Chemistry B 114 (46), S. 15288 - 15295 (2010)
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Klasczyk, B.; Knecht, V.: Kirkwood-Buff derived force field for alkali chlorides in simple point charge water. The Journal of Chemical Physics 132 (2), 024109 (2010)
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Klasczyk, B.; Knecht, V.; Lipowsky, R.; Dimova, R.: Interactions of alkali metal chlorides with phosphatidylcholine vesicles. Langmuir 26 (24), S. 18951 - 18958 (2010)
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Klasczyk, B.; Panzner, S.; Lipowsky, R.; Knecht, V.: Fusion-relevant changes in lipid shape of hydrated cholesterol hemisuccinate induced by pH and counterion species. The Journal of Physical Chemistry B 114 (46), S. 14941 - 14946 (2010)
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Klumpp, S.: Immer ans Ganze gekoppelt - wie Zellwachstum genetische Schaltkreise beeinflusst. GIT Labor-Fachzeitschrift 54 (5), S. 400 - 401 (2010)
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Knecht, V.: Model amyloid peptide B18 monomer and dimer studied by replica exchange molecular dynamics simulations. The Journal of Physical Chemistry B 114 (39), S. 12701 - 12707 (2010)
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Knecht, V.; Levine, Z. A.; Vernier, P. T.: Electrophoresis of neutral oil in water. Journal of Colloid and Interface Science 352 (2), S. 223 - 231 (2010)
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Knorr, R. L.; Staykova, M.; Gracià, R. S.; Dimova, R.: Wrinkling and electroporation of giant vesicles in the gel phase. Soft Matter 6 (9), S. 1990 - 1996 (2010)
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Kusumaatmaja, H.; Lipowsky, R.: Equilibrium morphologies and effective spring constants of capillary bridges. Langmuir 26 (24), S. 18734 - 18741 (2010)
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Li, X.; Lipowsky, R.; Kierfeld, J.: Coupling of actin hydrolysis and polymerization: reduced description with two nucleotide states. EPL 89 (3), 38010 (2010)
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Liepelt, S.; Lipowsky, R.: Impact of slip cycles on the operation modes and efficiency of molecular motors. Journal of Statistical Physics 141 (1), S. 1 - 16 (2010)
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Lipowsky, R.; Beeg, J.; Dimova, R.; Klumpp, S.; Müller, M. J. I.: Cooperative behavior of molecular motors: cargo transport and traffic phenomena. Physica E: Low-Dimensional Systems And Nanostructures 42 (3), S. 649 - 661 (2010)
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Menche, J.; Valleriani, A.; Lipowsky, R.: Asymptotic properties of degree-correlated scale-free networks. Physical Review E 81 (4), 046103 (2010)
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Menche, J.; Valleriani, A.; Lipowsky, R.: Dynamical processes on dissortative scale-free networks. EPL 89 (1), 18002 (2010)
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Mognetti, B. M.; Kusumaatmaja, H.; Yeomans, J. M.: Drop dynamics on hydrophobic and superhydrophobic surfaces. Faraday Discussions 146, S. 153 - 165 (2010)
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Müller, M. J. I.; Klumpp, S.; Lipowsky, R.: Bidirectional transport by molecular motors: enhanced processivity and response to external forces. Biophysical Journal 98 (11), S. 2610 - 2618 (2010)
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Pati, A. K.; Sahoo, M.; Pradhan, B.: Quantum work relations under trial Hamiltonians. Physical Review E 82 (3), 031112 (2010)
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Portet, T.; Dimova, R.: A new method for measuring edge tensions and stability of lipid bilayers: effect of membrane composition. Biophysical Journal 99 (10), S. 3264 - 3273 (2010)
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Rózycki, B.; Lipowsky, R.; Weikl, T. R.: Segregation of receptor-ligand complexes in cell adhesion zones: phase diagrams and the role of thermal membrane roughness. New Journal of Physics 12, 095003 (2010)
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Schäfle, C.; Brinkmann , M.; Bechinger, C.; Leiderer, P.; Lipowsky, R.: Morphological wetting transitions at ring-shaped surface domains. Langmuir 26 (14), S. 11878 - 11885 (2010)
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Smirnova, Y. G.; Marrink, S. J.; Lipowsky, R.; Knecht, V.: Solvent-exposed tails as prestalk transition states for membrane fusion at low hydration. Journal of the American Chemical Society 132 (19), S. 6710 - 6718 (2010)
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Valleriani, A.; Ignatova, Z.; Nagar, A.; Lipowsky, R.: Turnover of messenger RNA: polysome statistics beyond the steady state. EPL 89 (5), 58003 (2010)
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Vequi-Suplicy, C. C.; Riske, K. A.; Riske, K. A.; Knorr, R. L.; Dimova, R.: Vesicles with charged domains. Biochimica et Biophysica Acta-Biomembranes 1798 (7 Sp. Iss.), S. 1338 - 1347 (2010)
Zeitschriftenartikel
Vrancken, R. J.; Kusumaatmaja, H.; Hermans, K.; Prenen, A. M.; Pierre-Louis, O.; Bastiaansen, C. W. M.; Broer, D. J.: Fully reversible transition from Wenzel to Cassie-Baxter states on corrugated superhydrophobic surfaces. Langmuir 26 (5), S. 3335 - 3341 (2010)
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Weikl, T. R.: Transition states in protein folding. Communications in Computational Physics 7 (2 Sp. Iss.), S. 283 - 300 (2010)
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Yamamoto, T.; Aranda-Espinoza, S.; Dimova, R.; Lipowsky, R.: Stability of spherical vesicles in electric fields. Langmuir 26 (14), S. 12390 - 12407 (2010)
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Zhang, G.; Fedyunin, I.; Miekley, O.; Valleriani, A.; Moura, A.; Ignatova, Z.: Global and local depletion of ternary complex limits translational elongation. Nucleic Acids Research 38 (14), S. 4778 - 4787 (2010)
2009
Zeitschriftenartikel
Ackbarow, T.; Buehler, M. J.: Alpha-helical protein domains unify strength and robustness through hierarchical nanostructures. Nanotechnology 20 (7), 075103 (2009)
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Ackbarow, T.; Keten, S.; Buehler, M. J.: A multi-timescale strength model of alpha-helical protein domains. Journal of Physics: Condensed Matter 21 (3), 035111 (2009)
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Berger, F.; Müller, M. J. I.; Lipowsky, R.: Enhancement of the processivity of kinesin-transported cargo by myosin V. EPL 87 (2), 28002 (2009)
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Blecua, P.; Brinkmann, M.; Lipowsky, R.; Kierfeld, J.: Morphological transitions of liquid droplets on circular surface domains. Langmuir 25 (23), S. 13493 - 13502 (2009)
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Blow, M. L.; Kusumaatmaja, H.; Yeomans, J. M.: Imbibition through an array of triangular posts. Journal of Physics: Condensed Matter 21 (46), 464125 (2009)
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Chai, Y.; Klumpp, S.; Müller, M. J. I.; Lipowsky, R.: Traffic by multiple species of molecular motors. Physical Review E 80 (4), 041928 (2009)
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Chai, Y.; Lipowsky, R.; Klumpp, S.: Transport by molecular motors in the presence of static defects. Journal of Statistical Physics 135 (2), S. 241 - 260 (2009)
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Chelakkot, R.; Lipowsky, R.; Gruhn, T.: Self-assembling network and bundle structures in systems of rods and crosslinkers - a Monte Carlo study. Soft Matter 5 (7), S. 1504 - 1513 (2009)
Zeitschriftenartikel
Dimova, R.; Bezlyepkina, N.; Jordo, M. D.; Knorr, R. L.; Riske, K. A.; Staykova, M.; Vlahovska, P. M.; Yamamoto, T.; Yang, P.; Lipowsky, R.: Vesicles in electric fields: some novel aspects of membrane behavior. Soft Matter 5 (17), S. 3201 - 3212 (2009)
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Fuhrmans, M.; Knecht, V.; Marrink, S. J.: A single bicontinuous cubic phase induced by fusion peptides. Journal of the American Chemical Society 131 (26), S. 9166 - 9167 (2009)
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Grafmüller, A.; Shillcock, J.; Lipowsky, R.: The fusion of membranes and vesicles: pathway and energy barriers from dissipative particle dynamics. Biophysical Journal 96 (7), S. 2658 - 2675 (2009)
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Grafmüller, A.; Shillcock, J.; Lipowsky, R.: Dissipative particle dynamics of tension-induced membrane fusion. Molecular Simulation 35 (7), S. 554 - 560 (2009)
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Guo, K. K.; Shillcock, J.; Lipowsky, R.: Self-assembly of actin monomers into long filaments: brownian dynamics simulations. The Journal of Chemical Physics 131 (1), 015102 (2009)
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Guskova, O. A.; Pal, S.; Seidel, C.: Organization of nanoparticles at the polymer brush-solvent interface. EPL 88 (3), 38006 (2009)
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Gutlederer, E.; Gruhn, T.; Lipowsky, R.: Polymorphism of vesicles with multi-domain patterns. Soft Matter 5 (17), S. 3303 - 3311 (2009)
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Klumpp, S.; Zhang, Z.; Hwa, T.: Growth rate-dependent global effects on gene expression in bacteria. Cell 139 (7), S. 1366 - 1375 (2009)
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Korn, C. B.; Klumpp, S.; Lipowsky, R.; Schwarz, U. S.: Stochastic simulations of cargo transport by processive molecular motors. The Journal of Chemical Physics 131 (24), 245107 (2009)
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Krobath, H.; Rózycki, B.; Lipowsky, R.; Weikl, T. R.: Binding cooperativity of membrane adhesion receptors. Soft Matter 5 (17), S. 3354 - 3361 (2009)
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Kühne, T.; Lipowsky, R.; Kierfeld, J.: Zipping mechanism for force generation by growing filament bundles. EPL 86 (6), 68002 (2009)
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Kusumaatmaja, H.; Li, Y. H.; Dimova, R.; Lipowsky, R.: Intrinsic contact angle of aqueous phases at membranes and vesicles. Physical Review Letters 103 (23), 238103 (2009)
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Kusumaatmaja, H.; Yeomans, J. M.: Anisotropic hysteresis on ratcheted superhydrophobic surfaces. Soft Matter 5 (14), S. 2704 - 2707 (2009)
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Li, X.; Kierfeld, J.; Lipowsky, R.: Actin polymerization and depolymerization coupled to cooperative hydrolysis. Physical Review Letters 103 (4), 048102 (2009)
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Liepelt, S.; Lipowsky, R.: Operation modes of the moelcular motor kinesin. Physical Review E 79 (1), 011917 (2009)
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Lipowsky, R.; Beeg, J.; Dimova, R.; Klumpp, S.; Liepelt, S.; Müller, M. J. I.; Valleriani, A.: Active bio-systems: from single motor molecules to cooperative cargo transport. Biophysical Reviews and Letters 4 (1 & 2), S. 77 - 137 (2009)
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Lipowsky, R.; Liepelt, S.: Chemomechanical coupling of molecular motors: thermodynamics, network representations, and balance conditions (vol 130, pg 39, 2008). Journal of Statistical Physics 135 (4), S. 777 - 778 (2009)
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Lipowsky, R.; Liepelt, S.; Valleriani, A.: Energy Conversion by Molecular Motors Coupled to Nucleotide Hydrolysis. Journal of Statistical Physics 135 (5-6 Sp. Iss.), S. 951 - 975 (2009)
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Nagar, A.: Condensation transition in a model with attractive particles and non-local hops. Journal of Statistical Mechanics: Theory and Experiment, P10003 (2009)
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Noe, F.; Schütte, C.; Vanden-Eijnden, E.; Reich, L.; Weikl, T. R.: Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations. Proceedings of the National Academy of Sciences of the United States of America 106 (45), S. 19011 - 19016 (2009)
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Reich, L.; Becker, M.; Seckler, R.; Weikl, T. R.: In vivo folding efficiencies for mutants of the P22 tailspike beta-helix protein correlate with predicted stability changes. Biophysical Chemistry 141 (2-3), S. 186 - 192 (2009)
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Riske, K. A.; Knorr, R. L.; Dimova, R.: Bursting of charged multicomponent vesicles subjected to electric pulses. Soft Matter 5 (10), S. 1983 - 1986 (2009)
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Różycki, B.; Lipowsky, R.; Weikl, T. R.: Adhesion of surfaces via particle adsorption: exact results for a lattice of fluid columns. Journal of Statistical Mechanics: Theory and Experiment (11), P11006 (2009)
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Tauer, K.; Gau, D.; Schulze, S.; Völkel, A.; Dimova, R.: Thermal property changes of poly(N-isopropylacrylamide) microgel particles and block copolymers. Colloid and Polymer Science 287, S. 299 - 312 (2009)
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Vernier, P. T.; Ziegler, M. J.; Dimova, R.: Calcium binding and head group dipole angle in phosphatidylserine-phosphatidylcholine bilayers. Langmuir 25 (2), S. 1020 - 1027 (2009)
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Vlahovska, P. M.; Gracià, R. S.; Aranda-Espinoza, S.; Dimova, R.: Electrohydrodynamic model of vesicle deformation in alternating electric fields. Biophysical Journal 96 (12), S. 4789 - 4803 (2009)
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Weikl, T. R.; Asfaw, M.; Krobath, H.; Rózycki, B.; Lipowsky, R.: Adhesion of membranes via receptor-ligand complexes: domain formation, binding cooperativity, and active processes. Soft Matter 5 (17), S. 3213 - 3224 (2009)
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Weikl, T. R.; Deuster, C. v.: Selected-fit versus induced-fit protein binding: kinetic differences and mutational analysis. Proteins: Structure, Function, and Bioinformatics 75 (1), S. 104 - 110 (2009)
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Yang, P.; Lipowsky, R.; Dimova, R.: Nanoparticle formation in giant vesicles: synthesis in biomimetic compartments. Small 5 (18), S. 2033 - 2037 (2009)
2008
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Aranda, S.; Riske, K. A.; Lipowsky, R.; Dimova, R.: Morphological transitions of vesicles induced by alternating electric fields. Biophysical Journal 95 (2), S. L19 - L21 (2008)
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Beeg, J.; Klumpp, S.; Dimova, R.; Gracià, R. S.; Unger, E.; Lipowsky, R.: Transport of beads by several kinesin motors. Biophysical Journal 94 (2), S. 532 - 541 (2008)
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Dill, K. A.; Ozkan, S. B.; Shell, M. S.; Weikl, T. R.: The protein folding problem. Annual Review of Biophysics 37, S. 289 - 316 (2008)
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Gao, L. H.; Lipowsky, R.; Shillcock, J.: Tension-induced vesicle fusion: pathways and pore dynamics. Soft Matter 4 (6), S. 1208 - 1214 (2008)
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Kierfeld, J.; Baczynski, K.; Gutjahr, P.; Lipowsky, R.: Semiflexible polymers and filaments: from variational problems to fluctuations. AIP Conference Proceedings 1002 (1), S. 151 - 185 (2008)
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Kierfeld, J.; Frentzel, K.; Kraikivski, P.; Lipowsky, R.: Active dynamics of filaments in motility assays. European Physical Journal - Special Topics 157, S. 123 - 133 (2008)
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Klumpp, S.; Chai, Y.; Lipowsky, R.: Effects of the chemomechanical stepping cycle on the traffic of molecular motors. Physical Review E 78 (4), 041909 (2008)
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Knecht, V.: β-hairpin folding by a model amyloid peptide in solution and at an interface. The Journal of Physical Chemistry B 112 (31), S. 9476 - 9483 (2008)
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Knecht, V.; Risselada, H. J.; Mark, A. E.; Marrink, S. J.: Electrophoretic mobility does not always reflect the charge on an oil droplet. Journal of Colloid and Interface Science 318 (2), S. 477 - 486 (2008)
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Köster, S.; Kierfeld, J.; Pfohl, T.: Characterization of single semiflexible filaments under geometric constraints. European Physical Journal E 25 (4), S. 439 - 449 (2008)
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Li, Y. H.; Lipowsky, R.; Dimova, R.: Transition from complete to partial wetting within membrane compartments. Journal of the American Chemical Society 130 (37), S. 12252 - 12253 (2008)
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Lipowsky, R.; Liepelt, S.: Chemomechanical coupling of molecular motors: thermodynamics, network representations, and balance conditions. Journal of Statistical Physics 130 (1), S. 39 - 67 (2008)
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Lipowsky, R.; Liepelt, S.: Molecular motors and stochastic networks. Banach Center Publications 80, S. 167 - 195 (2008)
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