Publikationen

Zeitschriftenartikel (44)

  1. 2019
    Zeitschriftenartikel
    Antila, H.; Buslaev, P.; Favela-Rosales, F.; Mendes Ferreira, T.; Gushchin, I.; Javanainen, M.; Kav, B.; Madsen, J. J.; Melcr, J.; Miettinen, M. S. et al.; Määttä, J.; Nencini, R.; Ollila, O.H. S.; Piggot, T. J.: Headgroup Structure and Cation Binding in Phosphatidylserine Lipid Bilayers. The Journal of Physical Chemistry B 123 (43), S. 9066 - 9079 (2019)
  2. Zeitschriftenartikel
    Bachmann, F.; Bente, K.; Codutti, A.; Faivre, D.: Using Shape Diversity on the way to new Structure-Function Designs for Magnetic Micropropellers. Physical Review Applied 11, 034039 (2019)
  3. Zeitschriftenartikel
    Baier, M.; Rustmeier, N. H.; Harr, J.; Cyrus, N.; Reiss, G. J.; Grafmüller, A.; Blaum, B. S.; Stehle, T.; Hartmann, L.: Divalent sialylated precision glycooligomers binding to polyomaviruses and the effect of different linkers. Macromolecular Bioscience 19 (5), 1800426 (2019)
  4. Zeitschriftenartikel
    Berger, F.; Klumpp, S.; Lipowsky, R.: Force-dependent unbinding rate of molecular motors from stationary optical trap data. Nano Letters 19 (4), S. 2598 - 2602 (2019)
  5. Zeitschriftenartikel
    Böhme, M. A.; McCarthy, A. W.; Grasskamp, A. T.; Beuschel, C. B.; Goel, P.; Jusyte, M.; Laber, D.; Huang, S.; Rey, U.; Petzoldt, A. G. et al.; Lehmann, M.; Göttfert, F.; Haghighi, P.; Hell, S. W.; Owald, D.; Dickman, D.; Sigrist, S. J.; Walter, A. M.: Rapid active zone remodeling consolidates presynaptic potentiation. Nature Communications 10, 1085 (2019)
  6. Zeitschriftenartikel
    Bonazzi, F.; Weikl, T. R.: Membrane morphologies induced by arc-shaped scaffolds are determined by arc angle and coverage. Biophysical Journal 116 (7), S. 1239 - 1247 (2019)
  7. Zeitschriftenartikel
    Broeker, N. K.; Roske, Y.; Valleriani, A.; Stephan, M. S.; Andres, D.; Koetz, J.; Heinemann, U.; Barbirz, S.: Time-resolved DNA release from an O-antigen–specific Salmonella bacteriophage with a contractile tail. Journal of Biological Chemistry 294 (31), S. 11751 - 11761 (2019)
  8. Zeitschriftenartikel
    Chakraborty, T.; Bartelt, S. M.; Steinkühler, J.; Dimova, R.; Wegner, S. V.: Light controlled cell-to-cell adhesion and chemical communication in minimal synthetic cells. Chemical Communications 55 (64), S. 9448 - 9451 (2019)
  9. Zeitschriftenartikel
    Codutti, A.; Bente, K.; Faivre, D.; Klumpp, S.: Chemotaxis in external fields: simulations for active magnetic biological matter. PLoS Computational Biology 15 (12), e1007548 (2019)
  10. Zeitschriftenartikel
    Danglad-Flores, J. A.; Eftekhari, K.; Skirtach, A. G.; Riegler, H.: Controlled Deposition of Nano- and Micro-Size Particles by Spin Casting. Langmuir 35 (9), S. 3404 - 3412 (2019)
  11. Zeitschriftenartikel
    de la Calle, A. C.; Gerke, C.; Chang, X. J.; Grafmüller, A.; Hartmann, L.; Schmidt, S.: Multivalent interactions of polyamide based sequence‐controlled glycomacromolecules with concanavalin A. Macromolecular Bioscience 19 (6), 1900033 (2019)
  12. Zeitschriftenartikel
    Dimova, R.: Giant Vesicles and Their Use in Assays for Assessing Membrane Phase State, Curvature, Mechanics, and Electrical Properties. Annual Review of Biophysics 48, S. 93 - 119 (2019)
  13. Zeitschriftenartikel
    Dolai, S.; Barrio, J.; Peng, G.; Grafmüller, A.; Shalom, M.: Tailoring Carbon Nitride Properties and Photoactivity by Interfacial Engineering of Hydrogen-Bonded Frameworks. Nanoscale 11 (12), S. 5564 - 5570 (2019)
  14. Zeitschriftenartikel
    Ewins, E.; Lira, R. d.; Zhang, W.; Jiang, Y.; Antonietti, M.; Robinson, T.; Dimova, R.: Poly(Ionic Liquid) Nanoparticles Selectively Disrupt Biomembranes. Advanced Science 6 (4), 1801602 (2019)
  15. Zeitschriftenartikel
    Faizi, H. A.; Frey, S. L.; Steinkühler, J.; Dimova, R.; Vlahovska, P.: Bending rigidity of charged lipid bilayer membranes. Soft Matter 15 (29), S. 6006 - 6013 (2019)
  16. Zeitschriftenartikel
    Ghosh, R.; Satarifard, V.; Grafmüller, A.; Lipowsky, R.: Spherical nanovesicle transform into a multitude of nonspherical shapes. Nano Letters 19 (11), S. 7703 - 7711 (2019)
  17. Zeitschriftenartikel
    Gomez, D.; Huber, K.; Klumpp, S.: On protein folding in crowded conditions. The Journal of Physical Chemistry Letters 10 (24), S. 7650 - 7656 (2019)
  18. Zeitschriftenartikel
    Heidari, M.; Satarifard, V.; Mashagh, A.: Mapping a single-molecule folding process onto a topological space. Physical Chemistry Chemical Physics 21 (36), S. 20338 - 20345 (2019)
  19. Zeitschriftenartikel
    Ivanov, I.; Lira, R. d.; Tang, T.‐. D.; Franzmann, T.; Klosin, A.; da Silva, L. C.; Hyman, A.; Landfester, K.; Lipowsky, R.; Sundmacher, K. et al.; Dimova, R.: Directed growth of biomimetic microcompartments. Advanced Biosystems 3 (6), 1800314 (2019)
  20. Zeitschriftenartikel
    Klumpp, S.; Lefevre, C. T.; Bennet, M. A.; Faivre, D.: Swimming with magnets: From biological organisms to synthetic devices. Physics Reports: Review Section of Physics Letters 789, S. 1 - 54 (2019)
  21. Zeitschriftenartikel
    Krafft, D.; Lopez-Castellanos, S.; Dimova, R.; Ivanov, I.; Sundmacher, K.: Compartments for synthetic cells: osmotically assisted separation of oil from double emulsions in microfluidic chip. ChemBioChem: A European Journal of Chemical Biology 20 (20), S. 2604 - 2608 (2019)
  22. Zeitschriftenartikel
    Liu, Y.; Lipowsky, R.; Dimova, R.: Giant Vesicles Encapsulating Aqueous Two-Phase Systems: From Phase Diagrams to Membrane Shape Transformations. Frontiers in Chemistry 7, 213 (2019)
  23. Zeitschriftenartikel
    López García, P.; Göktas, M.; Bergues Pupo, A. E.; Koksch, B.; Varón Silva, D.; Blank, K. G.: Structural determinants of coiled coil mechanics. Physical Chemistry Chemical Physics 21 (18), S. 9145 - 9149 (2019)
  24. Zeitschriftenartikel
    Miettinen, M. S.; Lipowsky, R.: Bilayer membranes with frequent flip-flops have tensionless leaflets. Nanoletters 19 (8), S. 5011 - 5016 (2019)
  25. Zeitschriftenartikel
    Mobaraki, N.; Hemmateenejad, B.; Weikl, T. R.; Sakhteman, A.: On the relationship between docking scores and protein conformational changes in HIV-1 protease. Journal of molecular graphics and modelling 91, S. 186 - 193 (2019)
  26. Zeitschriftenartikel
    Moga, A.; Yandrapalli, N.; Dimova, R.; Robinson, T.: Optimization of the inverted emulsion method for high-yield production of biomimetic giant unilamellar vesicles. ChemBioChem: A European Journal of Chemical Biology 20 (20), S. 2647 - 2682 (2019)
  27. Zeitschriftenartikel
    Neuhaus, K.; Wamhoff, E.-C.; Freichel, T.; Grafmüller, A.; Rademacher, C.; Hartmann, L.: Asymmetrically branched precision glycooligomers targeting langerin. Biomacromolecules 20 (11), S. 4088 - 4095 (2019)
  28. Zeitschriftenartikel
    Pohl, A.; Berger, F.; Sullan, R. M.; Valverde-Tercedor, C.; Freindl, K.; Spiridis, N.; Lefevre, C.; Menguy, N.; Klumpp, S.; Blank, K. G. et al.; Faivre, D.: Decoding biomineralization: interaction of a Mad10 derived-peptide with magnetite thin films. Nano Letters 19 (11), S. 8207 - 8215 (2019)
  29. Zeitschriftenartikel
    Poojari, C.; Wilkosz, N.; Lira, R. d.; Dimova, R.; Jurkiewicz, P.; Petka, R.; Kepczynski, M.; Róg, T.: Behavior of the DPH fluorescence probe in membranes perturbed by drugs. Chemistry and Physics of Lipids 223, 104784 (2019)
  30. Zeitschriftenartikel
    Robalo, J. R.; Streacker, L. M.; Mendes de Oliveira, D.; Imhof, P.; Ben-Amotz, D.; Vila Verde, A.: Hydrophobic but water-friendly: favourable water-perfluoromethyl interactions promote hydration shell defects. Journal of the American Chemical Society 141 (40), S. 15856 - 15868 (2019)
  31. Zeitschriftenartikel
    Robalo, J. R.; Vila Verde, A.: Unexpected Trends in the Hydrophobicity of Fluorinated Amino Acids Reflect Competing Changes in Polarity and Conformation. Physical Chemistry Chemical Physics 21 (4), S. 2029 - 2038 (2019)
  32. Zeitschriftenartikel
    Robinson, T.: Microfluidic handling and analysis of giant vesicles for use as artificial cells: a review. Advanced Biosystems 3 (6), 1800318 (2019)
  33. Zeitschriftenartikel
    Robinson, T.; Dittrich, P. S.: Observations of membrane domain reorganization in mechanically compressed artificial cells. Chembiochem 20 (20), S. 2666 - 2673 (2019)
  34. Zeitschriftenartikel
    Rudorf, S.: Efficiency of protein synthesis inhibition depends on tRNA and codon compositions. PLoS Computational Biology, 1006979 (2019)
  35. Zeitschriftenartikel
    Schneible, J. D.; Singhal, A.; Lilova, R. L.; Hall, C. K.; Grafmüller, A.; Menegatti, S.: Tailoring the chemical modification of chitosan hydrogels to fine-tune the release of a synergistic combination of chemotherapeutics. Biomacromolecules 20 (8), S. 3126 - 3141 (2019)
  36. Zeitschriftenartikel
    Schullian, O.; Heazlewood, B.: Beyond direct simulation Monte Carlo (DSMC) modelling of collision environments. Molecular Physics 117 (21), S. 3076 - 3087 (2019)
  37. Zeitschriftenartikel
    Steinkühler, J.; Różycki, B.; Alvey, C.; Lipowsky, R.; Weikl, T. R.; Dimova, R.; Discher, D. E.: Membrane fluctuations and acidosis regulate cooperative binding of “marker of self” CD47 with macrophage checkpoint receptor SIRPα. Journal of Cell Science 132 (4), JCS216770 (2019)
  38. Zeitschriftenartikel
    Steinkühler, J.; Sezgin, E.; Urbančič, I.; Eggeling, C.; Dimova, R.: Mechanical properties of plasma membrane vesicles correlate with lipid order, viscosity and cell density. Communications Biology 2, 337 (2019)
  39. Zeitschriftenartikel
    Sumi, T.; Klumpp, S.: Is F1-ATPase a rotary motor with nearly 100% efficiency? Quantitative analysis of chemomechanical coupling and mechanical slip. Nano Letters 19 (5), S. 3370 - 3378 (2019)
  40. Zeitschriftenartikel
    Trösemeier, J.-H.; Rudorf, S.; Loessner, H.; Hofner, B.; Reuter, A.; Schulenborg, T.; Koch, I.; Bekeredjian-Ding, I.; Lipowsky, R.; Kamp, C.: Optimizing the dynamics of protein expression. Scientific Reports 9, 7511 (2019)
  41. Zeitschriftenartikel
    Uçar, M. C.; Lipowsky, R.: Force sharing and force generation by two teams of elastically coupled molecular motors. Scientific Reports 9, 454 (2019)
  42. Zeitschriftenartikel
    Wagle, S.; Georgiev, V.; Robinson, T.; Dimova, R.; Lipowsky, R.; Grafmüller, A.: Interaction of SNARE mimetic peptides with lipid bilayers: effects of secondary structure, bilayer composition and lipid anchoring. Scientific Reports 9, 7708 (2019)
  43. Zeitschriftenartikel
    Yandrapalli, N.; Robinson, T.: Ultra-high capacity microfluidic trapping of giant vesicles for high-throughput membrane studies. Lab on a Chip 19 (4), S. 626 - 633 (2019)
  44. Zeitschriftenartikel
    Yu, Y.; Tyrikos-Ergas, T.; Zhu, Y.; Fittolani, G.; Bordoni, V.; Singhal, A.; Fair, R. J.; Grafmüller, A.; Seeberger, P. H.; Delbianco, M.: Systematic hydrogen-bond manipulations to establish polysaccharide structure–property correlations. Angewandte Chemie International Edition in English 58 (37), S. 13127 - 13132 (2019)

Buch (3)

  1. 2019
    Buch
    Dimova, R.; Marques, C. (Hg.): The Giant Vesicle Book. CRC Press, Boca Raton, FL (2019), 652 S.
  2. Buch
    Lipowsky, R. (Hg.): Multiresponsive behavior of biomembranes and giant vesicles. Academic Press, London (2019)
  3. Buch
    Camboni, M.; Hanlon, J.; Pérez-García, R.; Floyd, P.: A state of play study of the market for so called "next generation" nanomaterials. European Chemicals Agency, Helsinki (2019), 85 S.

Buchkapitel (11)

  1. 2019
    Buchkapitel
    Agudo-Canalejo, J.; Knorr, R. L.: Formation of autophagosomes coincides with relaxation of membrane curvature. In: Methods in Molecular Biology, Bd. 1880, S. 173 - 188. Humana Press, New York (2019)
  2. Buchkapitel
    Bhatia, T.; Cornelius, F.: To Image the Orientation and Spatial Distribution of Reconstituted Na+,K+-ATPase in Model Lipid Membranes. In: Biomimetic Lipid Membranes: Fundamentals, Applications, and Commercialization, S. 29 - 46 (Hg. Kök, F. N.; Yildiz, A. A.; Inci, F.). Springer Nature, Cham, CH (2019)
  3. Buchkapitel
    Grafmüller, A.: Multiscale (re)modeling of lipid bilayer membranes. In: Advances in Biomembranes and Lipid Self-Assembly, Bd. 30, S. 39 - 104. Elsevier B.V., Amsterdam (2019)
  4. Buchkapitel
    Lipowsky, R.: Understanding and controlling the morphological complexity of biomembranes. In: Advances in Biomembranes and Lipid Self-Assembly, Bd. 30, S. 105 - 157 (2019)
  5. Buchkapitel
    Lira, R. d.; Dimova, R.: Fusion assays for model membranes: a critical review. In: Advances in Biomembranes and Lipid Self-Assembly, Bd. 30, S. 229 - 270. Elsevier B.V., Amsterdam (2019)
  6. Buchkapitel
    Miettinen, M. S.: Refined molecular dynamics simulations of phospholipid bilayers. In: Advances in Biomembranes and Lipid Self-Assembly, Bd. 30, S. 1 - 38 (2019)
  7. Buchkapitel
    Petri, J.; Knorr, R. L.: Interactive autophagy: Monitoring a novel form of selective autophagy by macroscopic observations. In: Methods in Molecular Biology, Bd. 1880, S. 729 - 738. Humana Press, New York (2019)
  8. Buchkapitel
    Robinson, T.: Microfluidics and giant vesicles: creation, capture, and applications for biomembranes. In: Advances in Biomembranes and Lipid Self-Assembly, Bd. 30, S. 271 - 315. Academic Press (2019)
  9. Buchkapitel
    Steinkühler, J.; Dimova, R.: 13. Giant vesicles: a biomimetic tool for assessing membrane material properties and interactions. In: Characterization of biological membranes: structure and dynamics, S. 415 - 440 (Hg. Nieh, M.-P.; Heberle, F. A.). Walter de Gruyter GmbH, Berlin/Munich/Boston (2019)
  10. Buchkapitel
    Weikl, T. R.; Hu, J.; Kav, B.; Różycki, B.: Binding and segregation of proteins in membrane adhesion: theory, modeling, and simulations. In: Advances in Biomembranes and Lipid Self-Assembly, Bd. 30, S. 159 - 194 (Hg. Lipowsky, R.) (2019)
  11. Buchkapitel
    Weikl, T. R.; Hu, J.; Kav, B.; Różycki, B.: Binding and segregation of proteins in membrane adhesion: theory, modeling, and simulations. In: Advances in Biomembranes and Lipid Self-Assembly, Bd. 30, S. 159 - 194 (2019)

Meeting Abstract (6)

  1. 2019
    Meeting Abstract
    Faizi, H. A.; Steinkühler, J.; Frey, S. L.; Dimova, R.; Vlahovska, P. M.: Lipid Charge Increases the Bending Rigidity of Bilayer Membranes. In Biophysical Journal, 116 (3, Suppl. 1), 251-Pos, S. 507a. Cell Press, Cambridge, Mass. (2019)
  2. Meeting Abstract
    Ghosh, R.; Grafmüller, A.; Lipowsky, R.: Budding and Fission of Vesicles Induced by Small Solute Molecules. In Biophysical Journal, 116 (3, Suppl. 1), 2530-Pos, S. 510a. Cell Press, Cambridge, Mass. (2019)
  3. Meeting Abstract
    Lepro, V.; Nagel, O.; Klumpp, S.; Lipowsky, R.; Beta, C.: Cooperative Transport by Amoeboid Cells: A Cellular Tug-of-War. In Biophysical Journal, 116 (3, Suppl. 1), 602-Pos, S. 122a. Cell Press, Cambridge, Mass. (2019)
  4. Meeting Abstract
    Miettinen, M. S.; NMRlipids Collaboration; Samuli Ollila, O. H.: LDB: Lipid Databank from the NMRlipids Project. In Biophysical Journal, 116 (3, Suppl. 1), 460-Pos, S. 91a. Cell Press, Cambridge, Mass. (2019)
  5. Meeting Abstract
    Steinkühler, J.; Bartelt, S.; Wegner, S.; Knorr, R. L.; Dimova, R.; Lipowsky, R.: Budding and Fission of Vesicles by Control of Membrane Spontaneous Curvature. In Biophysical Journal, 116 (3, Suppl. 1), 1619-Plat, S. 328a - 329a. Cell Press, Cambridge, Mass. (2019)
  6. Meeting Abstract
    Zhao, Z.; Knorr, R. L.; Agudo-Canalejo, J.; Robinson, T.; Lipowsky, R.; Dimova, R.: Nanotubes Transform into Double-Membrane Sheets at the Interface between Two Aqueous Polymer Solutions. In Biophysical Journal, 116 (3, Suppl. 1), 1123-Pos, S. 226a. Cell Press, Cambridge, Mass. (2019)

Hochschulschrift - Doktorarbeit (5)

  1. 2019
    Hochschulschrift - Doktorarbeit
    Danglad-Flores, J. A.: Quantitative analysis of the deposition of nonvolatile species on planar solid substrates from evaporative thin films. Dissertation, xix, 101 S., Technische Universität Berlin, Berlin (2019)
  2. Hochschulschrift - Doktorarbeit
    Ewins, E.: Probing the interactions between particles and biomembranes using lipid vesicles. Dissertation, 104 S., Technische Universität Berlin, Berlin (2019)
  3. Hochschulschrift - Doktorarbeit
    Haase, N.: The nascent peptide chain in the ribosomal exit tunnel. Dissertation, Universität Potsdam, Potsdam (2019)
  4. Hochschulschrift - Doktorarbeit
    Kav, B.: Membrane adhesion mediated via lipid-anchored saccharides. Dissertation, 125 S., Universität Potsdam, Potsdam (2019)
  5. Hochschulschrift - Doktorarbeit
    Wagle, S.: Multi scale modeling of SNARE-mimetic peptides for their applications in membrane fusion. Dissertation, xiv, 105 S., Universität Potsdam, Potsdam (2019)

Editorial (3)

  1. 2019
    Editorial
    Klumpp, S.; Siryaporn, A.; van Teeffelen, S.: Focus on bacterial mechanics. New Journal of Physics 21, S. 040201 (2019)
  2. Editorial
    Max Planck PhDnet Survey Group; Wu, C. M.; Regler, B.; Bäuerle, F. K.; Vögele, M.; Einhorn, L.; Elizarova, S.; Förste, S.; Lasser, J. S. &. J.: Perceptions of publication pressure in the Max Planck Society. Nature Human Behaviour 3, S. 1029 - 1030 (2019)
  3. Editorial
    Mutschler, H.; Robinson, T.; Tang, T.-Y. D.; Wegner, S.: Special issue on bottom-up synthetic biology. ChemBioChem: A European Journal of Chemical Biology 20 (20), S. 2533 - 2534 (2019)
 
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