Publications

Antila, H.; M. Ferreira, T.; Ollila, O. H. S.; Miettinen, M. S.: Using open data to rapidly benchmark biomolecular simulations: phospholipid conformational dynamics. Journal of Chemical Information and Modeling 61 (2), pp. 938 - 949 (2021)

Bacle, A.; Buslaev, P.; Garcia-Fandino, R.; Favela-Rosales, F.; Mendes Ferreira, T.; Fuchs, P. F. J.; Gushchin, I.; Javanainen, M.; Kiirikki, A. M.; Madsen, J. J. et al.; Melcr, J.; Milán Rodríguez, P.; Miettinen, M. S.; Ollila, O. H. S.; Papadopoulos, C. G.; Peón, A.; Piggot, T. J.; Piñeiro, Á.; Virtanen, S. I.: Inverse conformational selection in lipid–protein binding. Journal of the American Chemical Society 143 (34), pp. 13701 - 13706 (2021)

Yuan, J.; Antila, H.; Luijten, E.: Particle–particle particle–mesh algorithm for electrolytes between charged dielectric interfaces. The Journal of Chemical Physics 154 (9), 094115 (2021)

Knox-Brown, P.; Rindfleisch, T.; Günther, A.; Balow, K.; Bremer, A.; Walther, D.; Miettinen, M. S.; Hincha, D. K.; Thalhammer, A.: Similar yet different–structural and functional diversity among Arabidopsis thaliana LEA_4 proteins. International Journal of Molecular Sciences 21 (8), 2794 (2020)

Schullian, O.; Woodard, J.; Tirandaz, A.; Mashaghi, A.: A circuit topology approach to categorizing changes in biomolecular structure. Frontiers in Physics 8, 5 (2020)

Yuan, J.; Antila, H.; Luijten, E.: Structure of polyelectrolyte brushes on polarizable substrates. Macromolecules 53 (8), pp. 2983 - 2990 (2020)

Antila, H.; Buslaev, P.; Favela-Rosales, F.; Mendes Ferreira, T.; Gushchin, I.; Javanainen, M.; Kav, B.; Madsen, J. J.; Melcr, J.; Miettinen, M. S. et al.; Määttä, J.; Nencini, R.; Ollila, O.H. S.; Piggot, T. J.: Headgroup Structure and Cation Binding in Phosphatidylserine Lipid Bilayers. The Journal of Physical Chemistry B 123 (43), pp. 9066 - 9079 (2019)

Schullian, O.; Heazlewood, B.: Beyond direct simulation Monte Carlo (DSMC) modelling of collision environments. Molecular Physics 117 (21), pp. 3076 - 3087 (2019)

Miettinen, M. S.: Refined molecular dynamics simulations of phospholipid bilayers. In: Advances in Biomembranes and Lipid Self-Assembly, Vol. 30, pp. 1 - 38 (2019)

Antila, H.; Miettinen, M. S.: Data-driven development of lipid force fields for molecular dynamics simulations. In Biophysical Journal, 118 (3, Supplement 1), pp. 141a - 142a. Cell Press, Cambridge, Mass. (2020)

Miettinen, M. S.; Lipowsky, R.: Spontaneous curvature generation in asymmetric lipid bilayers with tensionless leaflets. In Biophysical Journal, 118 (3, Supplement 1). Cell Press, Cambridge, Mass. (2020)

Schullian, O.; Lipowsky, R.; Miettinen, M. S.: Formally correct solutions to local stress equation can be non-physical. In Biophysical Journal, 118 (3, Supplement 1), p. 89a. Cell Press, Cambridge, Mass. (2020)

Antila, H.; Wurl, A.; Ollila, O. H. S.; Miettinen, M. S.; Ferreira, T. M.: Quasi-uncoupled rotational diffusion of phospholipid headgroups from the main molecular frame. arxiv Condensed Matter: Materials Science, 2009.06774 (2020)