Publications
Journal Article (55)
1.
Journal Article
15 (8), 274 (2022)
A neural networks approach for the analysis of reproducible ribo–seq profiles. Algorithms 2.
Journal Article
11, 269 (2020)
Critical steps of Plasmodium falciparum ookinete maturation. Frontiers in Microbiology 3.
Journal Article
217 (11), e20200061 (2020)
A high-affinity antibody against the CSP N-terminal domain lacks Plasmodium falciparum inhibitory activity. Journal of Experimental Medicine 4.
Journal Article
294 (31), pp. 11751 - 11761 (2019)
Time-resolved DNA release from an O-antigen–specific Salmonella bacteriophage with a contractile tail. Journal of Biological Chemistry 5.
Journal Article
149, 244120 (2018)
Goodness of fit testing in dynamic single-molecule force spectroscopy. The Journal of Chemical Physics 6.
Journal Article
56 (14), pp. 1987 - 2000 (2017)
The role of SufS is restricted to Fe−S cluster biosynthesis in Escherichia coli. Biochemistry 7.
Journal Article
50 (46), 464001 (2017)
Analyzing the spatial positioning of nuclei in polynuclear giant cells. Journal of Physics D: Applied Physics 8.
Journal Article
Integrative meta-analysis reveals that most yeast proteins are very stable. bioRxiv (2017)
9.
Journal Article
374 (2063), 20150069 (2016)
Bacteria differently regulate mRNA abundance to specifically respond to various stresses. Philosophical Transactions of the Royal Society of London - Series A: Mathematical Physical and Engineering Sciences 10.
Journal Article
167 (3), pp. 803 - 815.e21 (2016)
Kinetic analysis of protein stability reveals age-dependent degradation. Cell 11.
Journal Article
641, pp. 25 - 42 (2016)
A proof theoretic view of spatial and temporal dependencies in biochemical systems. Theoretical Computer Science 12.
Journal Article
6, 28236 (2016)
Predict or classify: the deceptive role of time-locking in brain signal classification. Scientific Reports 13.
Journal Article
44 (6), pp. 2528 - 2537 (2016)
Quantitative assessment of ribosome drop-off in E. coli. Nucleic Acids Research 14.
Journal Article
11 (5), e0155028 (2016)
Degradation parameters from pulse-chase experiments. PLoS One 15.
Journal Article
6, 31561 (2016)
A conditional likelihood is required to estimate the selection coefficient in ancient DNA. Scientific Reports 16.
Journal Article
56, pp. 98 - 108 (2015)
On the impact of discreteness and abstractions on modelling noise in gene regulatory networks. Computational Biology and Chemistry 17.
Journal Article
316, pp. 29 - 44 (2015)
Verification of spatial and temporal modalities in biochemical systems. Electronic Notes in Theoretical Computer Science 18.
Journal Article
9 (Suppl 3), S8 (2015)
Modelling non-Markovian dynamics in biochemical reactions. BMC Systems Biology 19.
Journal Article
17 (1), pp. 125 - 137 (2015)
A quasi random walk to model a biological transport process. Methodology and Computing in Applied Probability 20.
Journal Article
31 (1), pp. 98 - 118 (2015)
On time duality for Markov chains. Stochastic Models 21.
Journal Article
9 (Suppl 3), S7 (2015)
A renewal model for the emergence of anomalous solute crowding in liposomes. BMC Systems Biology 22.
Journal Article
91 (1), 012711 (2015)
Weak correlation of starch and volume in synchronized photosynthetic cells. Physical Review E 23.
Journal Article
9 (Suppl 3), S2 (2015)
Single-molecule modeling of mRNA degradation by miRNA: lessons from data. BMC Systems Biology 24.
Journal Article
5, 17986 (2015)
Circular analysis in complex stochastic systems. Scientific Reports 25.
Journal Article
140 (18), 84102 (2014)
Pathway structure determination in complex stochastic networks with non-exponential dwell times. The Journal of Chemical Physics 26.
Journal Article
118 (35), pp. 10419 - 10425 (2014)
Stochastic kinetics on networks: when slow is fast. Journal of Physical Chemistry B 27.
Journal Article
140 (6), 064101 (2014)
Unveiling the hidden structure of complex stochastic biochemical networks. The Journal of Chemical Physics 28.
Journal Article
10 (4), 046008 (2013)
Effect of ribosome shielding on mRNA stability. Physical Biology 29.
Journal Article
8 (2), e55442 (2013)
Complex degradation processes lead to non-exponential decay patterns and age-dependent decay rates of messenger RNA. PLoS One 30.
Journal Article
7 (4), e35044 (2012)
Transient Phenomena in Gene Expression after Induction of Transcription. PLoS One 31.
Journal Article
137 (8), 084106 (2012)
Single-molecule stochastic times in a reversible bimolecular reaction. The Journal of Chemical Physics 32.
Journal Article
97 (2), 28009 (2012)
Quantitative approach to the stochastics of bone remodeling. EPL 33.
Journal Article
40 (11), e83 (2012)
FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads. Nucleic Acids Research (London) 34.
Journal Article
83 (6), 061129 (2011)
Sequences of phase transitions in Ising models on correlated networks. Physical Review E 35.
Journal Article
145 (5), pp. 1385 - 1404 (2011)
Translation by ribosomes with mRNA degradation: exclusion processes on aging tracks. Journal of Statistical Physics 36.
Journal Article
145 (1), pp. 1 - 22 (2011)
Stationary size distributions of growing cells with binary and multiple cell division. Journal of Statistical Physics 37.
Journal Article
83 (4), 042903 (2011)
Length-dependent translation of messenger RNA by ribosomes. Physical Review E 38.
Journal Article
81 (4), 046103 (2010)
Asymptotic properties of degree-correlated scale-free networks. Physical Review E 39.
Journal Article
89 (1), 18002 (2010)
Dynamical processes on dissortative scale-free networks. EPL 40.
Journal Article
89 (5), 58003 (2010)
Turnover of messenger RNA: polysome statistics beyond the steady state. EPL 41.
Journal Article
38 (14), pp. 4778 - 4787 (2010)
Global and local depletion of ternary complex limits translational elongation. Nucleic Acids Research 42.
Journal Article
4 (1 & 2), pp. 77 - 137 (2009)
Active bio-systems: from single motor molecules to cooperative cargo transport. Biophysical Reviews and Letters 43.
Journal Article
135 (5-6 Sp. Iss.), pp. 951 - 975 (2009)
Energy Conversion by Molecular Motors Coupled to Nucleotide Hydrolysis. Journal of Statistical Physics 44.
Journal Article
82 (2), 28011 (2008)
Dwell time distributions for kinesin's mechanical steps. EPL 45.
Journal Article
208 (2-4), pp. 159 - 164 (2007)
Multilevel selection in a gradient. Ecological Modelling 46.
Journal Article
70 (3), pp. 255 - 261 (2006)
Evolutionarily stable germination strategies with time-correlated yield. Theoretical Population Biology 47.
Journal Article
70 (1), pp. 1 - 9 (2006)
Effect of age on germination of dormant seeds. Theoretical Population Biology 48.
Journal Article
235 (4), pp. 521 - 530 (2005)
Biodiversity in model ecosystems, I: coexistence conditions for competing species. Journal of Theoretical Biology 49.
Journal Article
235 (4), pp. 531 - 539 (2005)
Biodiversity in model ecosystems, II: species assembly and food web structure. Journal of Theoretical Biology 50.
Journal Article
111 (2), pp. 235 - 244 (2005)
Can seeds predict their future? Germination strategies of density-regulated desert annuals. Oikos 51.
Journal Article
68 (3), pp. 197 - 203 (2005)
Algebraic determination of the evolutionary stable germination fraction. Theoretical Population Biology 52.
Journal Article
212, pp. 11 - 34 (2001)
Diversity patterns from ecological models at dynamical equilibrium. Journal of Theoretical Biology 53.
Journal Article
3 (1), pp. 332 - 335 (2001)
Effects of regulation on a self-organized market. Quantitative Finance 54.
Journal Article
86 (19), pp. 4418 - 4421 (2001)
Shape of ecological networks. Physical Review Letters 55.
Journal Article
60 (2), pp. R 1111 - R 1114 (1999)
Levy-nearest-neighbors Bak-Sneppen model. Physical Review E Book (1)
56.
Book
Biological evolution and statistical physics. Springer, Berlin (2002), 337 pp.
Book Chapter (2)
57.
Book Chapter
9465. Springer, Cham (2015)
A Declarative View of Signaling Pathways. In: Lecture Notes in Computer Science, Vol. 58.
Book Chapter
Valleriani, A.). Springer, Berlin (2002)
Dynamics and topology of species networks. In: Biological evolution and statistical physics, pp. 299 - 311 (Ed. Meeting Abstract (1)
59.
Meeting Abstract
104 (2 Suppl. 1), p. 257A - 257A. Cell Press, Cambridge, Mass. (2013)
Dependence of Protein Synthesis on TRNA Concentrations. In Biophysical Journal, Thesis - PhD (1)
60.
Thesis - PhD
Post-transcriptional control of gene expression. Dissertation, 238 pp., Universität Potsdam, Potsdam (2016)
Working Paper (1)
61.
Working Paper
A workbench for the translational control of gene expression. bioRxiv (2020)
Editorial (1)
62.
Editorial
4 (1 & 2), pp. 1 - 4 (2009)
Active biomimetic systems: force generation and cargo transport by molecular machines. Biophysical Reviews and Letters