Publications

Journal Article (759)

  1. 1.
    Agudo-Canalejo, J.; Lipowsky, R.: Uniform and Janus-like nanoparticles in contact with vesicles: Energy landscapes and curvature-induced forces. Soft Matter 13 (11), pp. 2155 - 2173 (2017)
  2. 2.
    Brilliantov, N. V.; Budkov, Y. A.; Seidel, C.: Theoretical and numerical analysis of nano-actuators based on grafted polyelectrolytes in electric field. Faraday Discussion (2017)
  3. 3.
    Bühning , M.; Valleriani, A.; Leimkühler, S.: The Role of SufS Is Restricted to Fe−S Cluster Biosynthesis in Escherichia coli. Biochemistry 56 (14), pp. 1987 - 2000 (2017)
  4. 4.
    Dimova, R.; Lipowsky, R.: Giant Vesicles Exposed to Aqueous Two-Phase Systems: Membrane Wetting, Budding Processes, and Spontaneous Tubulation. Advanced Materials Interfaces 4 (1), 1600451 (2017)
  5. 5.
    Gong, C. C.; Klumpp, S.: Modeling sRNA-Regulated Plasmid Maintenance. PLoS One (2017)
  6. 6.
    Pérez-García, R.; Riegler, H.: Controlled Self-Organized Positioning of Small Aggregates by Patterns of (Sub)nanosized Active Sites. Crystal Growth & Design 17 (4), pp. 1870 - 1875 (2017)
  7. 7.
    Raatz, M.; Weikl, T. R.: Membrane Tubulation by Elongated and Patchy Nanoparticles. Advanced Materials Interfaces 4 (1), 1600325 (2017)
  8. 8.
    Różycki, B.; Lipowsky, R.: Erratum: “Membrane curvature generated by asymmetric depletion layers of ions, small molecules, and nanoparticles” [J. Chem. Phys. 145, 074117 (2016)]. The Journal of Chemical Physics 146 (10), 109901 (2017)
  9. 9.
    Satarifard, V.; Kashefolgheta, S.; Verde, A. V.; Grafmüller, A.: Is the Solution Activity Derivative Sufficient to Parametrize Ion–Ion Interactions? Ions for TIP5P Water. Journal of Chemical Theory and Computation 13 (5), pp. 2112 - 2122 (2017)
  10. 10.
    Sauter, J.; Grafmüller, A.: A Procedure for Transferable Coarse-Grained Models of Aqueous Polysaccarides. Journal of Chemical Theory and Computation 13 (1), pp. 223 - 236 (2017)
  11. 11.
    Sun, J.; Xu, J.; Grafmüller, A.; Huang, X.; Liedel, C.; Algara-Siller, G.; Willinger, M.; Yang, C.; Fu, Y.; Wang, X. et al.; Shalom, M.: Self-assembled carbon nitride for photocatalytic hydrogen evolution and degradation of p-nitrophenol. Applied Catalysis B: Environmental 205, pp. 1 - 10 (2017)
  12. 12.
    Uçar, M. C.; Lipowsky, R.: Tug-of-war between two elastically coupled molecular motors: a case study on force generation and force balance. Soft Matter 13 (2), pp. 328 - 344 (2017)
  13. 13.
    Wijekoon, C. J. K.; Udagedara, S. R.; Knorr, R. L.; Dimova, R.; Wedd, A. G.; Xiao, Z.: Copper ATPase CopA from Escherichia coli: Quantitative Correlation between ATPase Activity and Vectorial Copper Transport. Journal of the American Chemical Society 139 (12), pp. 4266 - 4269 (2017)
  14. 14.
    Adhikari, U.; Goliaei, A.; Tsereteli, L.; Berkowitz, M. L.: Properties of Poloxamer Molecules and Poloxamer Micelles Dissolved in Water and Next to Lipid Bilayers: Results from Computer Simulations. The Journal of Physical Chemistry B 120 (26), pp. 5823 - 5830 (2016)
  15. 15.
    Agudo-Canalejo, J.; Lipowsky, R.: Stabilization of membrane necks by adhesive particles, substrate surfaces, and constriction forces. Soft Matter 12 (39), pp. 8155 - 8166 (2016)
  16. 16.
    Bahrami, A. H.; Lipowsky, R.; Weikl, T. R.: The role of membrane curvature for the wrapping of nanoparticles. Soft Matter 12 (2), pp. 581 - 587 (2016)
  17. 17.
    Bartholomäus, A.; Fedyunin, I.; Feist, P.; Sin, C.; Zhang, G.; Valleriani, A.; Ignatova, Z.: Bacteria differently regulate mRNA abundance to specifically respond to various stresses. Philosophical Transactions of the Royal Society of London - Series A: Mathematical Physical and Engineering Sciences 374 (2063), 20150069 (2016)
  18. 18.
    Bhatia, T.; Cornelius, F.; Brewer, J.; Bagatolli, L. A.; Simonsen, A. C.; Ipsen, J. H.; Mouritsen, O. G.: Spatial distribution and activity of Na +/K +-ATPase in lipid bilayer membranes with phase boundaries. Biochimica et Biophysica Acta (BBA) - Biomembranes 1858 (6), pp. 1390 - 1399 (2016)
  19. 19.
    Brilliantov, N. V.; Budkov, Y. A.; Seidel, C.: Generation of mechanical force by grafted polyelectrolytes in an electric field. Physical Review E 93 (3), 032505 (2016)
  20. 20.
    Brilliantov, N. V.; Budkov, Y. A.; Seidel, C.: Generation of mechanical force by grafted polyelectrolytes in an electric field: application to polyelectrolyte-based nano-devices. Philosophical Transactions of the Royal Society of London - Series A: Mathematical Physical and Engineering Sciences 374 (2080), 20160143 (2016)
  21. 21.
    Broeker, N. K.; Andres, D.; Kang, Y.; Gohlke, U.; Schmidt, A.; Kunstmann, S.; Santer, M.; Barbirz, S.: Complex carbohydrate recognition by proteins: Fundamental insights from bacteriophage cell adhesion systems. Perspectives in Science (2016)
  22. 22.
    Canto, A. M.T.M. d.; Robalo, J. R.; Santos, P. D.; Carvalho, A. J. P.; Ramalho, J.P. P.; Loura, L. M.S.: Diphenylhexatriene membrane probes DPH and TMA-DPH: A comparative molecular dynamics simulation study. Biochimica et Biophysica Acta - Biomembranes 1858 (11), pp. 2647 - 2661 (2016)
  23. 23.
    Catte, A.; Girych, M.; Javanainen, M.; Loison, C.; Melcr, J.; Miettinen, M. S.; Monticelli, L.; Maatta, J.; Oganesyan, V. S.; Ollila, O. H. S. et al.; Tynkkynen, J.; Vilov, S.: Molecular electrometer and binding of cations to phospholipid bilayers. Physical Chemistry Chemical Physics 18 (47), pp. 32560 - 32569 (2016)
  24. 24.
    Derakhshani-Molayousefi, M.; Kashefolgheta, S.; Eilers, J. E.; Lu, Y.: Computational Replication of the Primary Isotope Dependence of Secondary Kinetic Isotope Effects in Solution Hydride Transfer Reactions: Supporting the Isotopically Different Tunneling Ready State Conformations. The Journal of Physical Chemistry A 120 (25), pp. 4277 - 4284 (2016)
  25. 25.
    Feldmann, D.; Maduar, S. R.; Santer, M.; Lomadze, N.; Vinogradova, O. I.; Santer, S.: Manipulation of small particles at solid liquid interface: light driven diffusioosmosis. Scientific Reports (2016)
  26. 26.
    Fricke, N.; Dimova, R.: GM1 Softens POPC Membranes and Induces the Formation of Micron-Sized Domains. Biophysical Journal 111 (9), pp. 1935 - 1945 (2016)
  27. 27.
    Gomez, D.; Klumpp, S.: Facilitated diffusion in the presence of obstacles on the DNA. Physical Chemistry Chemical Physics 18 (16), pp. 11184 - 11192 (2016)
  28. 28.
    Jin, C.; Riegler, H.: Morphological Transitions During Melting of Small Cylindrical Aggregates. The Journal of Physical Chemistry C 120 (30), pp. 16815 - 16821 (2016)
  29. 29.
    Kang, Y.; Gohlke, U.; Engström, O.; Hamark, C.; Scheidt, T.; Kunstmann, S.; Heinemann, U.; Widmalm, G.; Santer, M.; Barbirz, S.: Bacteriophage Tailspikes and Bacterial O-Antigens as a Model System to Study Weak-Affinity Protein–Polysaccharide Interactions. The Journal of Organic Chemistry 138 (29), pp. 9109 - 9118 (2016)
  30. 30.
    Kav, B.; Ozturk, M.; Kabakcioglu, A.: Function changing mutations in glucocorticoid receptor evolution correlate with their relevance to mode coupling. Proteins: Structure, Function, and Bioinformatics 84 (5), pp. 655 - 665 (2016)
  31. 31.
    Klumpp, S.; Faivre, D.: Magnetotactic bacteria Magnetic navigation on the microscale. European Physical Journal - Special Topics 225 (11), pp. 2173 - 2188 (2016)
  32. 32.
    Krepel, D.; Gomez, D.; Klumpp, S.; Levy, Y.: Mechanism of Facilitated Diffusion during a DNA Search in Crowded Environments. The Journal of Physical Chemistry B 120 (43), pp. 11113 - 11122 (2016)
  33. 33.
    Kubsch, B.; Robinson, T.; Lipowsky, R.; Dimova, R.: Solution Asymmetry and Salt Expand Fluid-Fluid Coexistence Regions of Charged Membranes. Biophysical Journal 110 (12), pp. 2581 - 2584 (2016)
  34. 34.
    Lawatscheck, C.; Pickhardt, M.; Wieczorek, S.; Grafmüller, A.; Mandelkow, E.; Börner, H. G.: Generalizing the Concept of Specific Compound Formulation Additives towards Non-Fluorescent Drugs: A Solubilization Study on Potential Anti-Alzheimer-Active Small-Molecule Compounds. Angewandte Chemie International Edition 55 (30), pp. 8752 - 8756 (2016)
  35. 35.
    Lira, R. B. d.; Steinkühler, J.; Knorr, R. L.; Dimova, R.; Riske, K. A.: Posing for a picture: vesicle immobilization in agarose gel. Scientific Reports 6, 25254 (2016)
  36. 36.
    Liu, Y.; Agudo-Canalejo, J.; Grafmüller, A.; Dimova, R.; Lipowsky, R.: Patterns of Flexible Nanotubes Formed by Liquid-Ordered and Liquid-Disordered Membranes. ACS Nano 10 (1), pp. 463 - 474 (2016)
  37. 37.
    Luo, C.; Kröger, M.; Sommer, J.-U.: Entanglements and Crystallization of Concentrated Polymer Solutions: Molecular Dynamics Simulations. Macromolecules 49 (23), pp. 9017 - 9025 (2016)
  38. 38.
    McShane, E.; Sin, C.; Zauber, H.; Wells, J.; Donnelly, N.; Wang, X.; Hou, J.; Chen, W.; Storchova, Z.; Marsh, J. et al.; Valleriani, A.; Selbach, M.: Kinetic Analysis of Protein Stability Reveals Age-Dependent Degradation. Cell 167 (3), pp. 803 - 815.e21 (2016)
  39. 39.
    Memczak, H.; Lauster, D.; Kar, P.; Di Lella, S.; Volkmer, R.; Knecht, V.; Herrmann, A.; Ehrentreich-Förster, E.; Bier, F. F.; Stöcklein, W. F. M.: Anti-Hemagglutinin Antibody Derived Lead Peptides for Inhibitors of Influenza Virus Binding. PLoS One 11 (7), e0159074 (2016)
  40. 40.
    Molcan, M.; Gojzewski, H.; Skumiel, A.; Dutz, S.; Kovac, J.; Kubovcikova, M.; Kopcansky, P.; Vekas, L.; Timko, M.: Energy losses in mechanically modified bacterial magnetosomes. Journal of Physics D: Applied Physics 49 (36), 365002 (2016)
 
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