Publications

2008

Journal Article

Lipowsky, R.; Liepelt, S.: Chemomechanical coupling of molecular motors: thermodynamics, network representations, and balance conditions. Journal of Statistical Physics 130 (1), pp. 39 - 67 (2008)

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Lipowsky, R.; Liepelt, S.: Molecular motors and stochastic networks. Banach Center Publications 80, pp. 167 - 195 (2008)

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Müller, M. J. I.; Klumpp, S.; Lipowsky, R.: Motility states of molecular motors engaged in a stochastic tug-of-war. Journal of Statistical Physics 133 (6), pp. 1059 - 1081 (2008)

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Müller, M. J. I.; Klumpp, S.; Lipowsky, R.: Tug-of-war as a cooperative mechanism for bidirectional cargo transport by molecular motors. Proceedings of the National Academy of Sciences of the United States of America 105 (12), pp. 4609 - 4614 (2008)

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Różycki, B.; Lipowsky, R.; Weikl, T.: Effective surface interactions mediated by adhesive particles. EPL 84 (2), 26004 (2008)

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Różycki, B.; Weikl, T. R.; Lipowsky, R.: Stable patterns of membrane domains at corrugated substrates. Physical Review Letters 100 (9), 098103 (2008)

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Rusconi, M.; Zaikin, A.; Marwan, N.; Kurths, J.: Effect of stochastic resonance on bone loss in osteopenic conditions. Physical Review Letters 100 (12), 128101 (2008)

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Sharif, M. H.; Basermann, A.; Seidel, C.; Hunger, A.: High-performance computing of 1/√x_i and exp(±x_i) for a vector of inputs x_i on Alpha and IA-64 CPUs. Journal of Systems Architecture 54 (7), pp. 638 - 650 (2008)

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Staykova, M.; Lipowsky, R.; Dimova, R.: Membrane flow patterns in multicomponent giant vesicles induced by alternating electric fields. Soft Matter 4 (11), pp. 2168 - 2171 (2008)

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Valleriani, A.; Liepelt, S.; Lipowsky, R.: Dwell time distributions for kinesin's mechanical steps. EPL 82 (2), 28011 (2008)

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Weikl, T. R.: Transition states in protein folding kinetics: modeling Phi-Values of small beta-sheet proteins. Biophysical Journal 94 (3), pp. 929 - 937 (2008)

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Weikl, T. R.: Loop-closure principles in protein folding. Archives of Biochemistry and Biophysics 469 (1), pp. 67 - 75 (2008)

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2007

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Baczynski, K.; Lipowsky, R.; Kierfeld, J.: Stretching of buckled filaments by thermal fluctuations. Physical Review E 76 (6), 061914 (2007)

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Chaumet, P. C.; Pouligny, B.; Dimova, R.; Sojic, N.: Optical tweezers in interaction with an apertureless probe. Journal of Applied Physics 102 (2), 024915 (2007)

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Dill, K. A.; Ozkan, S. B.; Weikl, T. R.; Chodera, J. D.; Voelz, V. A.: The protein folding problem: when will it be solved? Current Opinion in Structural Biology 17 (3), pp. 342 - 346 (2007)

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Dimova, R.; Riske, K. A.; Aranda, S.; Bezlyepkina, N.; Knorr, R. L.; Lipowsky, R.: Giant vesicles in electric fields. Soft Matter 3 (7), pp. 817 - 827 (2007)

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Gao, L.; Shillcock, J. C.; Lipowsky, R.: Improved dissipative particle dynamics simulations of lipid bilayers. The Journal of Chemical Physics 126, 015101 (2007)

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Grafmüller, A.; Shillcock, J.; Lipowsky, R.: Pathway of membrane fusion with two tension-dependent energy barriers. Physical Review Letters 98 (21), 218101 (2007)

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Gruhn, T.; Franke, T.; Dimova, R.; Lipowsky, R.: Novel method for measuring the adhesion energy of vesicles. Langmuir 23 (10), pp. 5423 - 5429 (2007)

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Knecht, V.; Marrink, S. J.: Molecular dynamics simulations of lipid vesicle fusion in atomic detail. Biophysical Journal 92 (12), pp. 4254 - 4261 (2007)

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Knecht, V.; Möhwald, H.; Lipowsky, R.: Conformational diversity of the fibrillogenic fusion peptide B18 in different environments from molecular dynamics simulations. The Journal of Physical Chemistry B 111 (16), pp. 4161 - 4170 (2007)

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Korn, C. B.; Schwarz, U. S.: Mean first passage times for bond formation for a Brownian particle in linear shear flow above a wall. The Journal of Chemical Physics 126 (9), 095103 (2007)

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Krobath, H.; Schütz, G. J.; Lipowsky, R.; Weikl, T. R.: Lateral diffusion of receptor-ligand bonds in membrane adhesion zones: effect of thermal membrane roughness. EPL 78 (3), 38003 (2007)

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Kumar, N. A.; Seidel, C.: Interaction between two polyelectrolyte brushes. Physical Review E 76 (2), 020801 (2007)

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Liepelt, S.; Lipowsky, R.: Kinesin's network of chemomechanical motor cycles. Physical Review Letters 98 (25), 258102 (2007)

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Liepelt, S.; Lipowsky, R.: Steady-state balance conditions for molecular motor cycles and stochastic nonequilibrium processes. EPL 77 (5), 50002 (2007)

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Linke, G. T.; Lipowsky, R.; Gruhn, T.: Adhesion of fluid vesicles at chemically structured substrates. European Physical Journal E 24 (3), pp. 217 - 227 (2007)

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Nikolov, V.; Lipowsky, R.; Dimova, R.: Behavior of giant vesicles with anchored DNA molecules. Biophysical Journal 92 (12), pp. 4356 - 4368 (2007)

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Różycki, B.; Weikl, T. R.; Lipowsky, R.: Stochastic resonance for adhesion of membranes with active stickers. European Physical Journal E 22 (1), pp. 97 - 106 (2007)

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Shillcock, J.; Lipowsky, R.: Visualizing soft matter: mesoscopic simulations of membranes, vesivles and nanoparticles. Biophysical Reviews and Letters 2 (1), pp. 33 - 55 (2007)

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Valleriani, A.; Meene, T.: Multilevel selection in a gradient. Ecological Modelling 208 (2-4), pp. 159 - 164 (2007)

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Vlahovska, P. M.; Gracia, R. S.: Dynamics of a viscous vesicle in linear flows. Physical Review E 75 (1), 016313 (2007)

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Volodkin, D. V.; Ball, V.; Voegel, J. C.; Möhwald, H.; Dimova, R.; Marchi-Artzner, V.: Control of the interaction between membranes or vesicles: adhesion, fusion and release of dyes. Colloids and Surfaces A: Physicochemical and Engineering Aspects 303 (1-2), pp. 89 - 96 (2007)

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Weikl, T. R.; Dill, K. A.: Transition-states in protein folding kinetics: the structural interpretation of phi values. Journal of Molecular Biology (London) 365 (5), pp. 1578 - 1586 (2007)

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Zhou, H. J.; Lipowsky, R.: Activity patterns on random scale-free networks: global dynamics arising from local majority rules. Journal of Statistical Mechanics: Theory and Experiment, P01009 (2007)

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2006

Journal Article

Abada, A.; Bouakaz, K.; Azi, O.: Infrared behaviour of high-temperature quantum chromodynamics (QCD). Physica Scripta 74 (1), pp. 77 - 103 (2006)

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Asfaw, M.; Różycki, B.; Lipowsky, R.; Weikl, T. R.: Membrane adhesion via competing receptor/ligand bonds. EPL 76 (4), pp. 703 - 709 (2006)

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Bischofs, I. B.; Schwarz, U. S.: Collective effects in cellular structure formation mediated by compliant environments: A Monte Carlo study. Acta Biomaterialia 2 (3), pp. 253 - 265 (2006)

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Blecua, P.; Lipowsky, R.; Kierfeld, J.: Line tension effects for liquid droplets on circular surface domains. Langmuir 22 (26), pp. 11041 - 11059 (2006)

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Chelakkot, R.; Lipowsky, R.; Gruhn, T.: Novel low-density structure for hard rods with adhesive end groups. Macromolecules 39 (20), pp. 7138 - 7143 (2006)

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Dimova, R.; Aranda, S.; Bezlyepkina, N.; Nikolov, V.; Riske, K. A.; Lipowsky, R.: A practical guide to giant vesicles. Probing the membrane nanoregime via optical microscopy. Journal of Physics: Condensed Matter 18 (28), pp. S1151 - S1176 (2006)

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Dixit, P. D.; Weikl, T. R.: A simple measure of native-state topology and chain connectivity predicts the folding rates of two-state proteins with and without crosslinks. Proteins: Structure, Function, and Bioinformatics 64 (1), pp. 193 - 197 (2006)

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Franke, T.; Lipowsky, R.; Helfrich, W.: Adhesion of lipid membranes induced by CrCl₃. EPL 76 (2), pp. 339 - 345 (2006)

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Gutjahr, P.; Lipowsky, R.; Kierfeld, J.: Persistence length of semiflexible polymers and bending rigidity renormalization. EPL 76 (6), pp. 994 - 1000 (2006)

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Haluska, C. K.; Riske, K. A.; Marchi-Artzner, V.; Lehn, J. M.; Lipowsky, R.; Dimova, R.: Time scales of membrane fusion revealed by direct imaging of vesicle fusion with high temporal resolution. Proceedings of the National Academy of Sciences of the United States of America 103 (43), pp. 15841 - 15846 (2006)

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Iber, D.; Gruhn, T.: Organisation of B-cell receptors on the cell membrane. IEE Proceedings Systems Biology 153 (5), pp. 401 - 404 (2006)

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Illya, G.; Lipowsky, R.; Shillcock, J. C.: Two-component membrane material properties and domain formation from dissipative particle dynamics. The Journal of Chemical Physics 125 (11), 114710 (2006)

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Kierfeld, J.: Force-induced desorption and unzipping of semiflexible polymers. Physical Review Letters 97 (5), 058302 (2006)

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Kierfeld, J.; Gutjahr, P.; Kühne, T.; Kraikivski, P.; Lipowsky, R.: Buckling, bundling, and pattern formation: from semi-flexible polymers to assemblies of interacting filaments. Journal of Computational and Theoretical Nanoscience 3 (6), pp. 898 - 911 (2006)

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Kierfeld, J.; Kraikivski, P.; Lipowsky, R.: Filament ordering and clustering by molecular motors in motility assays. Biophysical Reviews and Letters 1 (4), pp. 363 - 374 (2006)

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Kierfeld, J.; Vinokur, V. M.: Slow crack propagation in heterogeneous materials. Physical Review Letters 96 (17), 175502 (2006)

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Klumpp, S.; Müller, M. J. I.; Lipowsky, R.: Cooperative transport by small teams of molecular motors. Biophysical Reviews and Letters 1 (4), pp. 353 - 361 (2006)

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Knecht, V.; Mark, A. E.; Marrink, S. J.: Phase behavior of a phospholipid/fatty acid/water mixture studied in atomic detail. Journal of the American Chemical Society 128 (6), pp. 2030 - 2034 (2006)

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Korn, C.; Schwarz, U. S.: Efficiency of initiating cell adhesion in hydrodynamic flow. Physical Review Letters 97 (13), 138103 (2006)

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Kraikivski, P.; Lipowsky, R.; Kierfeld, J.: Enhanced ordering of interacting filaments by molecular motors. Physical Review Letters 96 (25), 258103 (2006)

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Kraikivski, P.; Pouligny, B.; Dimova, R.: Implementing both short- and long-working-distance optical trappings into a commercial microscope. Review of Scientific Instruments 77 (11), 113703 (2006)

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Linke, G. T.; Lipowsky, R.; Gruhn, T.: Osmotically induced passage of vesicles through narrow pores. EPL 74 (5), pp. 916 - 922 (2006)

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Lipowsky, R.; Chai, Y.; Klumpp, S.; Liepelt, S.; Müller, M. J. I.: Molecular motor traffic: from biological nanomachines to macroscopic transport. Physica A: Statistical Mechanics and its Applications 372 (1), pp. 34 - 51 (2006)

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Naji, A.; Seidel, C.; Netz, R. R.: Theoretical approaches to neutral and charged polymer brushes. Advances in Polymer Science 198, pp. 149 - 183 (2006)

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Pal, S.; Seidel, C.: Dissipative particle dynamics simulations of polymer brushes: Comparison with molecular dynamics simulations. Macromolecular Theory and Simulations 15 (9), pp. 668 - 673 (2006)

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Reich, L.; Weikl, T. R.: Substructural cooperativity and parallel versus sequential events during protein unfolding. Proteins: Structure, Function, and Bioinformatics 63 (4), pp. 1052 - 1058 (2006)

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Richter, A.; Gruhn, T.: Structure formation and fractionation in systems of polydisperse attractive rods. The Journal of Chemical Physics 125 (6), 064908 (2006)

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Richter, A.; Gruhn, T.: Fractionation in polydisperse systems of spherocylindrical rods - The influence of attractive interactions and adjacent substrates. Molecular Physics 104 (22-24), pp. 3693 - 3699 (2006)

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Riske, K. A.; Bezlyepkina, N.; Lipowsky, R.; Dimova, R.: Electrofusion of model lipid membranes viewed with high temporal resolution. Biophysical Reviews and Letters 1 (4), pp. 387 - 400 (2006)

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Riske, K. A.; Dimova, R.: Electric pulses induce cylindrical deformations on giant vesicles in salt solutions. Biophysical Journal 91 (5), pp. 1778 - 1786 (2006)

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Różycki, B.; Lipowsky, R.; Weikl, T. R.: Adhesion of membranes with active stickers. Physical Review Letters 96 (4), 048101 (2006)

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Różycki, B.; Weikl, T. R.; Lipowsky, R.: Adhesion of membranes via switchable molecules. Physical Review E 73 (6), 061908 (2006)

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Schwarz, U. S.; Erdmann, T.; Bischofs, I. B.: Focal adhesions as mechanosensors: the two-spring model. Biosystems 83 (2-3), pp. 225 - 232 (2006)

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Shillcock, J. C.; Lipowsky, R.: The computational route from bilayer membranes to vesicle fusion. Journal of Physics: Condensed Matter 18 (28), pp. S1191 - S1219 (2006)

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Sinn, C. G.; Antonietti, M.; Dimova, R.: Binding of calcium to phosphatidylcholine-phosphatidylserine membranes. Colloids and Surfaces A: Physicochemical and Engineering Aspects 282, pp. 410 - 419 (2006)

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Sinn, C. G.; Dimova, R.; Huin, C.; Sel, Ö.; Antonietti, M.: Binding of ion pairs onto polymer gels via dehydration entropy: a new mechanism for ion exchange. Macromolecules 39, pp. 6310 - 6312 (2006)

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Valleriani, A.: Evolutionarily stable germination strategies with time-correlated yield. Theoretical Population Biology 70 (3), pp. 255 - 261 (2006)

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Valleriani, A.; Tielborger, K.: Effect of age on germination of dormant seeds. Theoretical Population Biology 70 (1), pp. 1 - 9 (2006)

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Wang, T. X.; Reinecke, A. A.; Cölfen, H.: In situ investigation of complex BaSO₄ fiber generation in the presence of sodium polyacrylate. 2. Crystallization mechanisms. Langmuir 22 (21), pp. 8986 - 8994 (2006)

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Weikl, T. R.: Wie Proteine ihre dreidimensionale Struktur finden. Bioforum 29, pp. 40 - 41 (2006)

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2005

Journal Article

Bastolla, U.; Lässig, M.; Manrubia, S. C.; Valleriani, A.: Biodiversity in model ecosystems, I: coexistence conditions for competing species. Journal of Theoretical Biology 235 (4), pp. 521 - 530 (2005)

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Bastolla, U.; Lässig, M.; Manrubia, S. C.; Valleriani, A.: Biodiversity in model ecosystems, II: species assembly and food web structure. Journal of Theoretical Biology 235 (4), pp. 531 - 539 (2005)

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Bischofs, I. B.; Schwarz, U. S.: Effect of poisson ratio on cellular structure formation. Physical Review Letters 95 (6), 068102 (2005)

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Breidenich, M.; Netz, R. R.; Lipowsky, R.: The influence of non-anchored polymers on the curvature of vesicles. Molecular Physics 103 (21-23), pp. 3169 - 3183 (2005)

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Brinkmann, M.; Kierfeld, J.; Lipowsky, R.: Stability of liquid channels or filaments in the presence of line tension. Journal of Physics: Condensed Matter 17 (15), pp. 2349 - 2364 (2005)

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Constantin, D.; Ollinger, C.; Vogel, M.; Salditt, T.: Electric field unbinding of solid-supported lipid multilayers. European Physical Journal E 18 (3), pp. 273 - 278 (2005)

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Georgieva, R.; Dimova, R.; Sukhorukov, G.; Ibarz, G.; Möhwald, H.: Influence of different salts on micro-sized polyelectrolyte hollow capsules. Journal of Materials Chemistry 15 (40), pp. 4301 - 4310 (2005)

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Gruhn, T.; Lipowsky, R.: Temperature dependence of vesicle adhesion. Physical Review E 71 (1), 011903 (2005)

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Illya, G.; Lipowsky, R.; Shillcock, J. C.: Effect of chain length and asymmetry on material properties of bilayer membranes. The Journal of Chemical Physics 122 (24), 244901 (2005)

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Imparato, A.; Shillcock, J. C.; Lipowsky, R.: Shape fluctuations and elastic properties of two-component bilayer membranes. EPL 69 (4), pp. 650 - 656 (2005)

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Kierfeld, J.; Kühne, T.; Lipowsky, R.: Discontinuous unbinding transitions of filament bundles. Physical Review Letters 95 (3), 038102 (2005)

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Kierfeld, J.; Lipowsky, R.: Duality mapping and unbinding transitions of semiflexible and directed polymers. Journal of Physics A: Mathematical and General 38 (9), pp. L155 - L161 (2005)

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Kierfeld, J.; Vinokur, V. M.: Competitive localization of vortex lines and interacting bosons. Physical Review Letters 94 (7), 077005 (2005)

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Klumpp, S.; Lipowsky, R.: Active diffusion of motor particles. Physical Review Letters 95 (26), 268102 (2005)

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Klumpp, S.; Lipowsky, R.: Cooperative cargo transport by several molecular motors. Proceedings of the National Academy of Sciences of the United States of America 102 (48), pp. 17284 - 17289 (2005)

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Klumpp, S.; Nieuwenhuizen, T. M.; Lipowsky, R.: Movements of molecular motors: Ratchets, random walks and traffic phenomena. Physica E: Low-Dimensional Systems And Nanostructures 29 (1-2), pp. 380 - 389 (2005)

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Klumpp, S.; Nieuwenhuizen, T. M.; Lipowsky, R.: Self-organized density patterns of molecular motors in arrays of cytoskeletal filaments. Biophysical Journal 88 (5), pp. 3118 - 3132 (2005)

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Kraikivski, P.; Lipowsky, R.; Kierfeld, J.: Point force manipulation and activated dynamics of polymers adsorbed on structured substrates. EPL 71 (1), pp. 138 - 144 (2005)

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Kraikivski, P.; Lipowsky, R.; Kierfeld, J.: Activated dynamics of semiflexible polymers on structured substrates. European Physical Journal E 16 (3), pp. 319 - 340 (2005)

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Kumar, N. A.; Seidel, C.: Polyelectrolyte brushes with added salt. Macromolecules 38 (22), pp. 9341 - 9350 (2005)

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Linke, G. T.; Lipowsky, R.; Gruhn, T.: Free fluid vesicles are not exactly spherical. Physical Review E 71 (5), 051602 (2005)

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Lipowsky, R.; Brinkmann, M.; Dimova, R.; Franke, T.; Kierfeld, J.; Zhang, X. Z.: Droplets, bubbles, and vesicles at chemically structured surfaces. Journal of Physics-Condensed Matter 17 (9 SI), pp. S537 - S558 (2005)

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Lipowsky, R.; Brinkmann, M.; Dimova, R.; Haluska, C.; Kierfeld, J.; Shillcock, J.: Wetting, budding, and fusion-morphological transitions of soft surfaces. Journal of Physics: Condensed Matter 17 (31), pp. S2885 - S2902 (2005)

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Lipowsky, R.; Klumpp, S.: 'Life is motion': multiscale motility of molecular motors. Physica A: Statistical Mechanics and its Applications 352 (1), pp. 53 - 112 (2005)

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Journal Article (1008)