Publications

2005

Journal Article

Merlo, C.; Dill, K. A.; Weikl, T. R.: phi values in protein-folding kinetics have energetic and structural components. Proceedings of the National Academy of Sciences of the United States of America 102 (29), pp. 10171 - 10175 (2005)

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Müller, M. J. I.; Klumpp, S.; Lipowsky, R.: Molecular motor traffic in a half-open tube. Journal of Physics: Condensed Matter 17 (47), pp. S3839 - S3850 (2005)

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Navas, B. P.; Lohner, K.; Deutsch, G.; Sevcsik, S.; Riske, K. A.; Dimova, R.; Garidel, P.; Pabst, G.: Composition dependence of vesicle morphology and mixing properties in a bacterial model membrane system. Biochimica et Biophysica Acta-Biomembranes 1716 (1), pp. 40 - 48 (2005)

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Nieuwenhuizen, T. M.; Klumpp, S.; Lipowsky, R.: Walks of molecular motors interacting with immobilized filaments. Physica A: Statistical Mechanics and its Applications 350 (1), pp. 122 - 130 (2005)

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Ortiz, V.; Nielsen, S. O.; Discher, D. E.; Klein, M. L.; Lipowsky, R.; Shillcock, J.: Dissipative particle dynamics simulations of polymersomes. The Journal of Physical Chemistry B 109 (37), pp. 17708 - 17714 (2005)

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Richter, A.; Pleimling, M.; Hüller, A.: Density of states of classical spin systems with continuous degrees of freedom. Physical Review E 71 (5), 056705 (2005)

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Riske, K. A.; Dimova, R.: Electro-deformation and poration of giant vesicles viewed with high temporal resolution. Biophysical Journal 88 (2), pp. 1143 - 1155 (2005)

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Safran, S. A.; Gov, N.; Nicolas, A.; Schwarz, U. S.; Tlusty, T.: Physics of cell elasticity, shape and adhesion. Physica A: Statistical Mechanics and its Applications 352 (1), pp. 171 - 201 (2005)

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Schwarz, U. S.; Bischofs, I. B.: Physical determinants of cell organization in soft media. Medical Engineering & Physics 27 (9), pp. 763 - 772 (2005)

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Seemann, R.; Brinkmann, M.; Kramer, E. J.; Lange, F. F.; Lipowsky, R.: Wetting morphologies at microstructured surfaces. Proceedings of the National Academy of Sciences of the United States of America 102 (6), pp. 1848 - 1852 (2005)

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Shillcock, J. C.; Lipowsky, R.: Tension-induced fusion of bilayer membranes and vesicles. Nature Materials 4 (3), pp. 225 - 228 (2005)

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Tielborger, K.; Valleriani, A.: Can seeds predict their future? Germination strategies of density-regulated desert annuals. Oikos 111 (2), pp. 235 - 244 (2005)

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Valleriani, A.: Algebraic determination of the evolutionary stable germination fraction. Theoretical Population Biology 68 (3), pp. 197 - 203 (2005)

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Weikl, T. R.: Loop-closure events during protein folding: Rationalizing the shape of Phi-value distributions. Proteins: Structure, Function, and Genetics 60 (4), pp. 701 - 711 (2005)

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Zhou, H. J.: Long-range frustration in a spin-glass model of the vertex-cover problem. Physical Review Letters 94 (21), 217203 (2005)

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Zhou, H. J.: Long-range frustration in finite connectivity spin glasses: a mean-field theory and its application to the random K-satisfiability problem. New Journal of Physics 7, 123 (2005)

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Zhou, H. J.; Lipowsky, R.: Dynamic pattern evolution on scale-free networks. Proceedings of the National Academy of Sciences of the United States of America 102 (29), pp. 10052 - 10057 (2005)

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Zhou, H. J.; Zhang, Y.: Hierarchical chain model of spider capture silk elasticity. Physical Review Letters 94 (2), 028104 (2005)

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2004

Journal Article

Ahrens, H.; Förster, S.; Hehn, C. A.; Kumar, N. A.; Naji, A.; Netz, R. R.; Seidel, C.: Nonlinear osmotic brush regime: experiments, simulations and scaling theory. The Journal of Physical Chemistry B 108 (43), pp. 16870 - 16876 (2004)

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Bischofs, I. B.; Safran, S. A.; Schwarz, U. S.: Elastic interactions of active cells with soft materials. Physical Review E 69 (2), 021911 (2004)

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Brinkmann, M.; Kierfeld, J.; Lipowsky, R.: A general stability criterion for droplets on structured substrates. Journal of Physics A: Mathematical and General 37 (48), pp. 11547 - 11573 (2004)

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Erdmann, T.; Schwarz, U. S.: Stochastic dynamics of adhesion clusters under shared constant force and with rebinding. The Journal of Chemical Physics 121 (18), pp. 8997 - 9017 (2004)

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Erdmann, T.; Schwarz, U. S.: Adhesion clusters under shared linear loading: a stochastic analysis. EPL 66 (4), pp. 603 - 609 (2004)

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Erdmann, T.; Schwarz, U. S.: Stability of adhesion clusters under constant force. Physical Review Letters 92 (10), 108102 (2004)

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Holm, C.; Joanny, J. F.; Kremer, K.; Netz, R. R.; Reineker, P.; Seidel, C.; Vilgis, T. A.; Winkler, R. G.: Polyelectrolyte theory. Advances in Polymer Science 166, pp. 67 - 111 (2004)

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Kierfeld, J.: Single-vortex fluctuations in layered superconductors: electromagnetic coupling and crossover to strong pinning. Physical Review B 69 (14), 144513 (2004)

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Kierfeld, J.; Niamploy, O.; Sa-yakanit, V.; Lipowsky, R.: Stretching of semiflexible polymers with elastic bonds. European Physical Journal E 14 (1), pp. 17 - 34 (2004)

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Kierfeld, J.; Vinokur, V.: Lindemann criterion and vortex lattice phase transitions in type-II superconductors. Physical Review B 69 (2), 024501 (2004)

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Klumpp, S.; Lipowsky, R.: Asymmetric simple exclusion processes with diffusive bottlenecks. Physical Review E 70 (6), 066104 (2004)

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Journal Article

Klumpp, S.; Lipowsky, R.: Phase transitions in systems with two species of molecular motors. EPL 66 (1), pp. 90 - 96 (2004)

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Kraikivski, P.; Lipowsky, R.; Kierfeld, J.: Barrier crossing of semiflexible polymers. EPL 66 (5), pp. 763 - 769 (2004)

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Lipowsky, R.: Biomimetic membrane modelling - pictures from the twilight zone. Nature Materials 3 (9), pp. 589 - 591 (2004)

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Journal Article

Marti, J.; Csajka, F. S.: Transition path sampling study of flip-flop transitions in model lipid bilayer membranes. Physical Review E 69 (6), 061918 (2004)

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Journal Article

Naji, A.; Netz, R.: Attraction of like-charged macroions in the strong-coupling limit. European Physical Journal E 13 (1), pp. 43 - 59 (2004)

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Journal Article

Nieuwenhuizen, T. M.; Klumpp, S.; Lipowsky, R.: Random walks of molecular motors arising from diffusional encounters with immobilized filaments. Physical Review E 69 (6), 061911 (2004)

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Journal Article

Riske, K. A.; Amaral, L. Q.; Döbereiner, H. G.; Lamy, M. T.: Mesoscopic structure in the chain-melting regime of anionic phospholipid vesicles: DMPG. Biophysical Journal 86 (6), pp. 3722 - 3733 (2004)

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Różycki, B.; Napiorkowski, M.: Phase transitions in multicomponent string model. EPL 66 (1), pp. 35 - 40 (2004)

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Rühe, J.; Ballauff, M.; Biesalski, M.; Dziezok, P.; Gröhn, F.; Johannsmann, D.; Houbenov, N.; Hugenberg, N.; Konradi, R.; Minko, S. et al.; Motornov, M.; Netz, R. R.; Schmidt, M.; Seidel, C.; Stamm, M.; Stephan, T.; Usov, D.; Zhang, H. N.: Polyelectrolyte brushes. Advances in Polymer Science 165, pp. 79 - 150 (2004)

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Journal Article

Schwarz, U. S.; Alon, R.: L-selectin-mediated leukocyte tethering in shear flow is controlled by multiple contacts and cytoskeletal anchorage facilitating fast rebinding events. Proceedings of the National Academy of Sciences of the United States of America 101 (18), pp. 6940 - 6945 (2004)

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Journal Article

Sinn, C. G.; Dimova, R.; Antonietti, M.: Isothermal titration calorimetry of the polyelectrolyte/water interaction and binding of Ca²⁺: effects determining the quality of polymeric scale inhibitors. Macromolecules 37 (9), pp. 3444 - 3450 (2004)

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Journal Article

Uyaver, S.; Seidel, C.: Pearl-necklace structures in annealed polyelectrolytes. The Journal of Physical Chemistry B 108 (49), pp. 18804 - 18814 (2004)

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Journal Article

Valencia, A.: Crystal shapes on striped surface domains. Journal of Physics: Condensed Matter 16 (28), pp. 4785 - 4798 (2004)

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Valencia, A.; Lipowsky, R.: Nucleation through a double barrier on a chemically patterned substrate. Langmuir 20 (5), pp. 1986 - 1996 (2004)

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Journal Article

Weikl, T. R.; Lipowsky, R.: Pattern formation during T-cell adhesion. Biophysical Journal 87 (6), pp. 3665 - 3678 (2004)

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Journal Article

Weikl, T. R.; Palassini, M.; Dill, K. A.: Cooperativity in two-state protein folding kinetics. Protein Science 13 (3), pp. 822 - 829 (2004)

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2003

Journal Article

Bischofs, I. B.; Schwarz, U. S.: Cell organization in soft media due to active mechanosensing. Proceedings of the National Academy of Sciences of the United States of America 100 (16), pp. 9274 - 9279 (2003)

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Journal Article

Dimova, R.; Lipowsky, R.; Mastai, Y.; Antonietti, M.: Binding of polymers to calcite crystals in water: characterization by isothermal titration calorimetry. Langmuir 19 (15), pp. 6097 - 6103 (2003)

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Döbereiner, H. G.; Gompper, G.; Haluska, C. K.; Kroll, D. M.; Petrov, P. G.; Riske, K. A.: Advanced flicker spectroscopy of fluid membranes. Physical Review Letters 91 (4), 048301 (2003)

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Journal Article

Döbereiner, H. G.; Petrov, P. G.; Riske, K. A.: Signatures of chemical reactions in the morphology and fluctuations of giant vesicles. Journal of Physics: Condensed Matter 15 (1), pp. S303 - S308 (2003)

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Journal Article

Dwir, O.; Solomon, A.; Mangan, S.; Kansas, G. S.; Schwarz, U. S.; Alon, R.: Avidity enhancement of L-selectin bonds by flow: shear-promoted rotation of leukocytes turn labile bonds into functional tethers. The Journal of Cell Biology: JCB 163 (3), pp. 649 - 659 (2003)

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Journal Article

Erdmann, T.; Kröger, M.; Hess, S.: Phase behavior and structure of Janus fluids. Physical Review E 67 (4), 041209 (2003)

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Journal Article

Fenzl, W.: van der Waals interaction and wetting transitions. EPL 64 (1), pp. 64 - 69 (2003)

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Journal Article

Imparato, A.; Shillcock, J. C.; Lipowsky, R.: Lateral and transverse diffusion in two-component bilayer membranes. European Physical Journal E 11 (1), pp. 21 - 28 (2003)

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Journal Article

Kierfeld, J.; Lipowsky, R.: Unbundling and desorption of semiflexible polymers. EPL 62 (2), pp. 285 - 291 (2003)

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Journal Article

Klumpp, S.; Lipowsky, R.: Traffic of molecular motors through tube-like compartments. Journal of Statistical Physics 113 (1-2), pp. 233 - 268 (2003)

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Journal Article

Lamy-Freund, M. T.; Riske, K. A.: The peculiar thermo-structural behavior of the anionic lipid DMPG. Chemistry and Physics of Lipids 122 (1-2), pp. 19 - 32 (2003)

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Journal Article

Lipowsky, R.; Dimova, R.: Domains in membranes and vesicles. Journal of Physics: Condensed Matter 15 (1), pp. S31 - S45 (2003)

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Journal Article

Lipowsky, R.; Jaster, N.: Molecular motor cycles: From ratchets to networks. Journal of Statistical Physics 110 (3-6), pp. 1141 - 1167 (2003)

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Journal Article

Livadaru, L.; Netz, R.; Kreuzer, H. J.: Stretching response of discrete semiflexible polymers. Macromolecules 36 (10), pp. 3732 - 3744 (2003)

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Livadaru, L.; Netz, R.; Kreuzer, H. J.: Interacting chain model for poly(ethylene glycol) from first principles - stretching of a single molecule using the transfer matrix approach. The Journal of Chemical Physics 118 (3), pp. 1404 - 1416 (2003)

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Journal Article

Marti, J.; Csajka, F. S.: Flip-flop dynamics in a model lipid bilayer membrane. EPL 61 (3), pp. 409 - 414 (2003)

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Journal Article

Naji , A.; Netz, R.; Seidel, C.: Non-linear osmotic brush regime: simulations and mean-field theory. European Physical Journal E 12 (2), pp. 223 - 237 (2003)

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Journal Article

Netz, R.; Andelman, D.: Neutral and charged polymers at interfaces. Physics Reports: Review Section of Physics Letters 380 (1-2), pp. 1 - 95 (2003)

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Journal Article

Pencer, J.; Hallett, F. R.: Effects of vesicle size and shape on static and dynamic light scattering measurements. Langmuir 19 (18), pp. 7488 - 7497 (2003)

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Journal Article

Reinecke, A. A.; Döbereiner, H. G.: Slow relaxation dynamics of tubular polymersomes after thermal quench. Langmuir 19 (3), pp. 605 - 608 (2003)

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Journal Article

Riske, K. A.; Döbereiner, H. G.: Diacylglycerol-rich domain formation in giant stearoyl-oleoyl phosphatidylcholine vesicles driven by phospholipase C activity. Biophysical Journal 85 (4), pp. 2351 - 2362 (2003)

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Riske, K. A.; Döbereiner, H. G.; Lamy-Freund, M. T.: Comment on "Gel-Fluid transition in dilute versus concentrated DMPG aqueous dispersions". The Journal of Physical Chemistry B 107 (22), pp. 5391 - 5392 (2003)

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Journal Article

Riske, K. A.; Fernandez, R. M.; Nascimento, O. R.; Bales, B. L.; Lamy-Freund, M. T.: DMPG gel-fluid thermal transition monitored by a phospholipid spin labeled at the acyl chain end. Chemistry and Physics of Lipids 124 (1), pp. 69 - 80 (2003)

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Journal Article

Salditt, T.; Vogel, M.; Fenzl, W.: Thermal fluctuations and positional correlations in oriented lipid membranes. Physical Review Letters 90 (17), 178101 (2003)

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Schneider, M.; Brinkmann, M.; Möhwald, H.: Adsorption of polyethylenimine on graphite: an atomic force microscopy study. Macromolecules 36 (25), pp. 9510 - 9518 (2003)

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Schwarz, U. S.; Balaban, N. Q.; Riveline, D.; Addadi, L.; Bershadsky, A.; Safran, S. A.; Geiger, B.: Measurement of cellular forces at focal adhesions using elastic micro-patterned substrates. Materials Science & Engineering C-Biomimetic and Supramolecular Systems 23 (3), pp. 387 - 394 (2003)

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Seidel, C.: Strongly stretched polyelectrolyte brushes. Macromolecules 36 (7), pp. 2536 - 2543 (2003)

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Uyaver, S.; Seidel, C.: First-order conformational transition of annealed polyelectrolytes in a poor solvent. EPL 64 (4), pp. 536 - 542 (2003)

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Weikl, T. R.: Indirect interactions of membrane-adsorbed cylinders. European Physical Journal E 12 (2), pp. 265 - 273 (2003)

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Weikl, T. R.; Dill, K. A.: Folding rates and low-entropy-loss routes of two-state proteins. Journal of Molecular Biology (London) 329 (3), pp. 585 - 598 (2003)

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Weikl, T. R.; Dill, K. A.: Folding kinetics of two-state proteins: Effect of circularization, permutation, and crosslinks. Journal of Molecular Biology (London) 332 (4), pp. 953 - 963 (2003)

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Zhou, H. J.: Distance, dissimilarity index, and network community structure. Physical Review E 67 (6), 061901 (2003)

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Zhou, H. J.: Network landscape from a Brownian particle's perspective. Physical Review E 67 (4), 041908 (2003)

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Zhou, H. J.: Vertex cover problem studied by cavity method: analytics and population dynamics. European Physical Journal B 32 (2), pp. 265 - 270 (2003)

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Zhou, H. J.; Zhang, Y.; Ou-Yang, Z. C.: The elastic theory of a single DNA molecule. Pramana-Journal of Physics 61 (2), pp. 353 - 360 (2003)

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2002

Journal Article

Brilliantov, N. V.; Malinin, V. V.; Netz, R.: Systematic field-theory for the hard-core one-component plasma. European Physical Journal D: Atomic, Molecular, Optical and Plasma Physics 18 (3), pp. 339 - 345 (2002)

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Journal Article

Brinkmann, M.; Lipowsky, R.: Wetting morphologies on substrates with striped surface domains. Journal of Applied Physics 92 (8), pp. 4296 - 4306 (2002)

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Journal Article

Bundschuh, R.; Lässig, M.: Delocalization transitions of semiflexible manifolds. Physical Review E 65 (6), 061502 (2002)

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Dimova, R.; Seifert, U.; Pouligny, B.; Förster, S.; Döbereiner, H. G.: Hyperviscous diblock copolymer vesicles. European Physical Journal E 7 (3), pp. 241 - 250 (2002)

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Dwir, O.; Steeber, D. A.; Schwarz, U. S.; Camphausen, R. T.; Kansas, G. S.; Tedder, T. F.; Alon, R.: L-selectin dimerization enhances tether formation to properly spaced ligand. Journal of Biological Chemistry 277 (24), pp. 21130 - 21139 (2002)

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Fleck, C.; Netz, R.; von Grünberg, H. H.: Poisson-Boltzmann theory for membranes with mobile charged lipids and the pH-dependent interaction of a DNA molecule with a membrane. Biophysical Journal 82 (1), pp. 76 - 92 (2002)

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Friedel, P.; John, A.; Pospiech, D.; Jehnichen, D.; Netz, R.: Modelling of the phase separation behaviour of semiflexible diblock copolymers. Macromolecular Theory and Simulations 11 (7), pp. 785 - 793 (2002)

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Haluska, C. K.; Góźdź, W. T.; Döbereiner, H. G.; Förster, S.; Gompper, G.: Giant hexagonal superstructures in diblock-copolymer membranes. Physical Review Letters 89 (23), 238302, p. 238302 (2002)

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Kunze, K. K.; Netz, R.: Morphologies of semiflexible polyelectrolyte complexes. EPL 58 (2), pp. 299 - 305 (2002)

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Kunze, K. K.; Netz, R.: Complexes of semiflexible polyelectrolytes and charged spheres as models for salt-modulated nucleosomal structures. Physical Review E 66 (1), 011918, p. 011918 (2002)

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Lipowsky, R.: Domains and rafts in membranes - Hidden dimensions of selforganization. Journal of Biological Physics 28 (2), pp. 195 - 210 (2002)

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Moreira, A. G.; Netz, R.: Counterions at charge-modulated substrates. EPL 57 (6), pp. 911 - 917 (2002)

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Moreira, A. G.; Netz, R.: Simulations of counterions at charged plates. European Physical Journal E 8 (1), pp. 33 - 58 (2002)

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Moreira, A. G.; Netz, R.: Virial expansion for charged colloids and electrolytes. European Physical Journal D: Atomic, Molecular, Optical and Plasma Physics 21 (1), pp. 83 - 96 (2002)

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Nieuwenhuizen, T. M.; Klumpp, S.; Lipowsky, R.: Walks of molecular motors in two and three dimensions. EPL 58 (3), pp. 468 - 474 (2002)

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Journal Article

Riske, K. A.; Döbereiner, H. G.; Lamy-Freund, M. T.: Gel-fluid transition in dilute versus concentrated DMPG aqueous dispersions. The Journal of Physical Chemistry B 106 (2), pp. 239 - 246 (2002)

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Schwarz, U. S.; Balaban, N. Q.; Riveline, D.; Bershadsky, A.; Geiger, B.; Safran, S. A.: Calculation of forces at focal adhesions from elastic substrate data: The effect of localized force and the need for regularization. Biophysical Journal 83 (3), pp. 1380 - 1394 (2002)

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Seifert, U.: Dynamic strength of adhesion molecules: Role of rebinding and self-consistent rates. EPL 58 (5), pp. 792 - 798 (2002)

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Shillcock, J. C.; Lipowsky, R.: Equilibrium structure and lateral stress distribution of amphiphilic bilayers from dissipative particle dynamics simulations. The Journal of Chemical Physics 117 (10), pp. 5048 - 5061 (2002)

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Journal Article (1008)