Publications of Markus S. Miettinen

Antila, H.; M. Ferreira, T.; Ollila, O. H. S.; Miettinen, M. S.: Using open data to rapidly benchmark biomolecular simulations: phospholipid conformational dynamics. Journal of Chemical Information and Modeling 61 (2), pp. 938 - 949 (2021)

Bacle, A.; Buslaev, P.; Garcia-Fandino, R.; Favela-Rosales, F.; Mendes Ferreira, T.; Fuchs, P. F. J.; Gushchin, I.; Javanainen, M.; Kiirikki, A. M.; Madsen, J. J. et al.; Melcr, J.; Milán Rodríguez, P.; Miettinen, M. S.; Ollila, O. H. S.; Papadopoulos, C. G.; Peón, A.; Piggot, T. J.; Piñeiro, Á.; Virtanen, S. I.: Inverse conformational selection in lipid–protein binding. Journal of the American Chemical Society 143 (34), pp. 13701 - 13706 (2021)

Knox-Brown, P.; Rindfleisch, T.; Günther, A.; Balow, K.; Bremer, A.; Walther, D.; Miettinen, M. S.; Hincha, D. K.; Thalhammer, A.: Similar yet different–structural and functional diversity among Arabidopsis thaliana LEA_4 proteins. International Journal of Molecular Sciences 21 (8), 2794 (2020)

Miettinen, M. S.; Ollila, O. H. S.: LDB: lipid databank from the NMRlipids project. Biophysical Journal 116 (3), p. 91A - 91A (2019)

Antila, H.; Buslaev, P.; Favela-Rosales, F.; Mendes Ferreira, T.; Gushchin, I.; Javanainen, M.; Kav, B.; Madsen, J. J.; Melcr, J.; Miettinen, M. S. et al.; Määttä, J.; Nencini, R.; Ollila, O.H. S.; Piggot, T. J.: Headgroup Structure and Cation Binding in Phosphatidylserine Lipid Bilayers. The Journal of Physical Chemistry B 123 (43), pp. 9066 - 9079 (2019)

Miettinen, M. S.; Lipowsky, R.: Bilayer membranes with frequent flip-flops have tensionless leaflets. Nanoletters 19 (8), pp. 5011 - 5016 (2019)

Dasgupta, R.; Miettinen, M. S.; Fricke, N.; Lipowsky, R.; Dimova, R.: The glycolipid GM1 reshapes asymmetric biomembranes and giant vesicles by curvature generation. Proceedings of the National Academy of Sciences of the United States of America 115 (22), pp. 5756 - 5761 (2018)

Eickelmann, S.; Danglad-Flores, J.; Chen, G.; Miettinen, M. S.; Riegler, H.: Meniscus shape around nanoparticles embedded in molecularly thin liquid films. Langmuir 34 (38), pp. 11364 - 11373 (2018)

Catte, A.; Girych, M.; Javanainen, M.; Loison, C.; Melcr, J.; Miettinen, M. S.; Monticelli, L.; Maatta, J.; Oganesyan, V. S.; Ollila, O. H. S. et al.; Tynkkynen, J.; Vilov, S.: Molecular electrometer and binding of cations to phospholipid bilayers. Physical Chemistry Chemical Physics 18 (47), pp. 32560 - 32569 (2016)

Botan, A.; Favela-Rosales, F.; Fuchs, P. F. J.; Javanainen, M.; Kanduc, M.; Kulig, W.; Lamber, A.; Loison, C.; Lyubartsev, A.; Miettinen, M. S. et al.; Monticelli, L.; Maatta, J.; Ollila, O. H. S.; Retegan, M.; Rog, T.; Santuz, H.; Tynkkynen, J.: Toward Atomistic Resolution Structure of Phosphatidylcholine Headgroup and Glycerol Backbone at Different Ambient Conditions. The Journal of Physical Chemistry B 119 (49), pp. 15075 - 15088 (2015)

Schulz, J. C. F.; Miettinen, M. S.; Netz, R. R.: Unfolding and folding internal friction of beta-hairpins is smaller than that of alpha-helices. The Journal of Physical Chemistry B 119 (13), pp. 4565 - 4574 (2015)

Mortier, J.; Nyakatura, E. K.; Reimann, O.; Huhmann, S.; Daldrop, J. O.; Baldauf, C.; Wolber, G.; Miettinen, M. S.; Koksch, B.: Coiled-coils in phage display screening: insight into exceptional selectivity provided by molecular dynamics. Journal of Chemical Information and Modeling 55 (3), pp. 495 - 500 (2015)

Fuchs, P. F. J.; Javanainen, M.; Lamberg, A.; Miettinen, M. S.; Monticelli, L.; Maatta, J.; Ollila, O. H. S.; Retegan, M.; Santuz, H.: Open collaboration that uses NMR data to judge the correctness of phospholipid glycerol and head group structures in molecular dynamics simulations. Biophysical Journal 108 (2), p. 411A - 411A (2015)

Miettinen, M. S.; Monticelli, L.; Nedumpully-Govindan, P.; Knecht, V.; Ignatova, Z.: Initiating polyglutamine aggregation - computational clarification of the structural details. Biophysical Journal 108 (2), p. 386A - 386A (2015)

Gerling, U. I. M.; Miettinen, M. S.; Koksch, B.: Concluding the amyloid formation pathway of a coiled-coil-based peptide from the size of the critical nucleus. ChemPhysChem 16 (1), pp. 108 - 114 (2015)

Roethlein, C.; Miettinen, M. S.; Ignatova, Z.: A flexible approach to assess fluorescence decay functions in complex energy transfer systems. BMC Biophysics 8, 5 (2015)

Roethlein, C.; Miettinen, M. S.; Borwankar, T.; Buerger, J.; Mielke, T.; Kumke, M. U.; Ignatova, Z.: Architecture of polyglutamine-containing fibrils from time-resolved fluorescence decay. Journal of Biological Chemistry 289 (39), pp. 26817 - 26828 (2014)

Miettinen, M. S.; Monticelli, L.; Nedumpully-Govindan, P.; Knecht, V.; Ignatova, Z.: Stable polyglutamine dimers can contain β-hairpins with interdigitated side chains but not α-helices, β-nanotubes, β-pseudohelices, or steric zippers. Biophysical Journal 106 (8), pp. 1721 - 1728 (2014)

Javanainen, M.; Hammaren, H.; Monticelli, L.; Jeon, J.-H.; Miettinen, M. S.; Martinez-Seara, H.; Metzler, R.; Vattulainen, I.: Anomalous and normal diffusion of proteins and lipids in crowded lipid membranes. Faraday Discussions 161, pp. 397 - 417 (2013)

Miettinen, M. S.; Knecht, V.; Monticelli, L.; Ignatova, Z.: Assessing polyglutamine conformation in the nucleating event by molecular dynamics simulations. The Journal of Physical Chemistry B 116 (34), pp. 10259 - 10265 (2012)