Publications of Angelo Valleriani

Awad, S.; Valleriani, A.; Chiarugi, D.: A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length. NAR: genomics and bioinformatics 6 (2), lqae036 (2024)

Heller, A.-D.; Valleriani, A.; Cipitria, A.: Phase diagrams of bone remodeling using a 3D stochastic cellular automaton. PLOS ONE 19 (6), e0304694 (2024)

Tsirigoni, A.-M.; Göktas, M.; Atris, Z.; Valleriani, A.; Vila Verde, A.; Blank, K. G.: Chain sliding versus β-sheet formation upon shearing single α-helical coiled coils. Macromolecular Bioscience 23 (5), 202200563 (2023)

Giacomini, G.; Graziani, C.; Lachi, V.; Bongini, P.; Pancino, N.; Bianchini, M.; Chiarugi, D.; Valleriani, A.; Andreini, P.: A neural networks approach for the analysis of reproducible ribo–seq profiles. Algorithms 15 (8), 274 (2022)

Mohr, E.; Hinnenthal, T.; Gryzik, S.; Hoang, Y.; Lischke, T.; Retzlaff, J.; Mekonnen, A.; Paul, F.; Valleriani, A.; Radbruch, A. et al.; Vera, J.; Baumgrass, R.: Bin-based visualization of cytokine-co-expression patterns of IL-10-producing CD4 T cell subsets. European Journal of Immunology 52 (10), pp. 1684 - 1687 (2022)

Siciliano, G.; Costa, G.; Suárez-Cortés, P.; Valleriani, A.; Alano, P.; Levashina, E. A.: Critical steps of Plasmodium falciparum ookinete maturation. Frontiers in Microbiology 11, 269 (2020)

Thai, E.; Costa, G.; Weyrich, A.; Murugan, R.; Oyen, D.; Prieto, K.; Bosch, A.; Valleriani, A.; Wu, N. C.; Pholcharee, T. et al.; Scally, S. W.; Wilson, I. A.; Wardemann, H.; Julien, J.-P.; Levashina, E. A.: A high-affinity antibody against the CSP N-terminal domain lacks Plasmodium falciparum inhibitory activity. Journal of Experimental Medicine 217 (11), e20200061 (2020)

Broeker, N. K.; Roske, Y.; Valleriani, A.; Stephan, M. S.; Andres, D.; Koetz, J.; Heinemann, U.; Barbirz, S.: Time-resolved DNA release from an O-antigen–specific Salmonella bacteriophage with a contractile tail. Journal of Biological Chemistry 294 (31), pp. 11751 - 11761 (2019)

Bergues Pupo, A. E.; Göktas, M.; Tunn, I.; López García, P.; Vila Verde, A.; Blank, K.; Valleriani, A.: Goodness of fit testing in dynamic single-molecule force spectroscopy. The Journal of Chemical Physics 149, 244120 (2018)

Bühning , M.; Valleriani, A.; Leimkühler, S.: The role of SufS is restricted to Fe−S cluster biosynthesis in Escherichia coli. Biochemistry 56 (14), pp. 1987 - 2000 (2017)

Stange, M.; Hintsche, M.; Sachse, K.; Gerhardt, M.; Valleriani, A.; Beta, C.: Analyzing the spatial positioning of nuclei in polynuclear giant cells. Journal of Physics D: Applied Physics 50 (46), 464001 (2017)

Wiechecki, K.; Manohar, S.; Silva, G.; Tchourine, K.; Jacob, S.; Valleriani, A.; Vogel, C.: Integrative meta-analysis reveals that most yeast proteins are very stable. bioRxiv (2017)

Bartholomäus, A.; Fedyunin, I.; Feist, P.; Sin, C.; Zhang, G.; Valleriani, A.; Ignatova, Z.: Bacteria differently regulate mRNA abundance to specifically respond to various stresses. Philosophical Transactions of the Royal Society of London - Series A: Mathematical Physical and Engineering Sciences 374 (2063), 20150069 (2016)

McShane, E.; Sin, C.; Zauber, H.; Wells, J.; Donnelly, N.; Wang, X.; Hou, J.; Chen, W.; Storchova, Z.; Marsh, J. et al.; Valleriani, A.; Selbach, M.: Kinetic analysis of protein stability reveals age-dependent degradation. Cell 167 (3), pp. 803 - 815.e21 (2016)

Rusconi, M.; Valleriani, A.: Predict or classify: the deceptive role of time-locking in brain signal classification. Scientific Reports 6, 28236 (2016)

Sin, C.; Chiarugi, D.; Valleriani, A.: Quantitative assessment of ribosome drop-off in E. coli. Nucleic Acids Research 44 (6), pp. 2528 - 2537 (2016)

Sin, C.; Chiarugi, D.; Valleriani, A.: Degradation parameters from pulse-chase experiments. PLoS One 11 (5), e0155028 (2016)

Valleriani, A.: A conditional likelihood is required to estimate the selection coefficient in ancient DNA. Scientific Reports 6, 31561 (2016)

Keller, P.; Rœlly, S.; Valleriani, A.: A quasi random walk to model a biological transport process. Methodology and Computing in Applied Probability 17 (1), pp. 125 - 137 (2015)

Keller, P.; Rœlly, S.; Valleriani, A.: On time duality for Markov chains. Stochastic Models 31 (1), pp. 98 - 118 (2015)