Publications of Sophia Rudorf

Journal Article (9)

Journal Article
Trösemeier, J.-H.; Rudorf, S.; Lößner, H.; Hofner, B.; Kamp, C.: Modellentwicklung und maschinelles Lernen erhöhen die Proteinausbeute. Biospektrum 26 (3), pp. 262 - 264 (2020)
Journal Article
Vonshak, O.; Divon, Y.; Förste, S.; Garenne, D.; Noireaux, V.; Lipowsky, R.; Rudorf, S.; Daube, S. S.; Bar-Ziv, R. H.: Programming multi-protein assembly by gene-brush patterns and two-dimensional compartment geometry. Nature Nanotechnology 15 (9), pp. 783 - 791 (2020)
Journal Article
Rudorf, S.: Efficiency of protein synthesis inhibition depends on tRNA and codon compositions. PLoS Computational Biology, 1006979 (2019)
Journal Article
Trösemeier, J.-H.; Rudorf, S.; Loessner, H.; Hofner, B.; Reuter, A.; Schulenborg, T.; Koch, I.; Bekeredjian-Ding, I.; Lipowsky, R.; Kamp, C.: Optimizing the dynamics of protein expression. Scientific Reports 9, 7511 (2019)
Journal Article
Haase, N.; Holtkamp, W.; Lipowsky, R.; Rodnina, M.; Rudorf, S.: Decomposition of time-dependent fluorescence signals reveals codon-specific kinetics of protein synthesis. Nucleic Acids Research (London) 46 (22), p. e130 (2018)
Journal Article
Rudorf, S.; Lipowsky, R.: Protein synthesis in E. coli: dependence of codon-specific elongation on tRNA concentration and codon usage. PLoS One 10 (8), e0134994 (2015)
Journal Article
Rudorf, S.; Thommen, M.; Rodnina, M. V.; Lipowsky, R.: Deducing the kinetics of protein synthesis in vivo from the transition rates measured in vitro. PLoS Computational Biology 10 (10), e1003909 (2014)
Journal Article
Deneke, C.; Rudorf, S.; Valleriani, A.: Transient Phenomena in Gene Expression after Induction of Transcription. PLoS One 7 (4), e35044 (2012)
Journal Article
Rudorf, S.; Rädler, J. O.: Self-assembly of stable monomolecular nucleic acid lipid particles with a size of 30 nm. Journal of the American Chemical Society 134 (28), pp. 11652 - 11658 (2012)

Book Chapter (1)

Book Chapter
Alirezaeizanjani, Z.; Trösemeier, J.-H.; Kamp, C.; Rudorf, S.: Tailoring codon usage to the underlying biology for protein expression optimization. In: Methods in Molecular Biology, Vol. 2406, pp. 85 - 92 (Ed. Walker, J. M.). New York, NY (2022)

Meeting Abstract (2)

Meeting Abstract
Rudorf, S.; Thommen, M.; Rodnina, M. V.; Lipowsky, R.: Protein Synthesis by Ribosomes: Mapping In Vitro onto In Vivo Rates. In Biophysical Journal, 106 (2), 240A. Cell Press, Cambridge, Mass. (2014)
Meeting Abstract
Rudorf, S.; Valleriani, A.; Lipowsky, R.: Dependence of Protein Synthesis on TRNA Concentrations. In Biophysical Journal, 104 (2 Suppl. 1), p. 257A - 257A. Cell Press, Cambridge, Mass. (2013)

Thesis - PhD (1)

Thesis - PhD
Rudorf, S.: Protein synthesis by ribosomes. Dissertation, Universität Potsdam, Potsdam (2015)
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