Scientific Publications of the Institute

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Journal Article (9)

2016
Journal Article
Olarte, C.; Chiarugi, D.; Falaschi, M.; Hermith, D.: A proof theoretic view of spatial and temporal dependencies in biochemical systems. Theoretical Computer Science 641, pp. 25 - 42 (2016)
Journal Article
Sin, C.; Chiarugi, D.; Valleriani, A.: Quantitative assessment of ribosome drop-off in E. coli. Nucleic Acids Research (London) 44 (6), pp. 2528 - 2537 (2016)
Journal Article
Sin, C.; Chiarugi, D.; Valleriani, A.: Degradation Parameters from Pulse-Chase Experiments. PLoS One 11 (5), e0155028 (2016)
2015
Journal Article
Bodei, C.; Bortolussi, L.; Chiarugi, D.; Guerriero, M. L.; Policriti, A.; Romanel, A.: On the impact of discreteness and abstractions on modelling noise in gene regulatory networks. Computational Biology and Chemistry 56, pp. 98 - 108 (2015)
Journal Article
Chiarugi, D.; Falaschi, M.; Hermith, D.; Olarte, C.: Verification of Spatial and Temporal Modalities in Biochemical Systems. Electronic Notes in Theoretical Computer Science 316, pp. 29 - 44 (2015)
Journal Article
Chiarugi, D.; Falaschi, M.; Hermith, D.; Olarte, C.; Torella, L.: Modelling non-Markovian dynamics in biochemical reactions. BMC Systems Biology 9 (Suppl 3), S8 (2015)
Journal Article
Paradisi, P.; Allegrini, P.; Chiarugi, D.: A renewal model for the emergence of anomalous solute crowding in liposomes. BMC Systems Biology 9 (Suppl 3), S7 (2015)
Journal Article
Rading, M. M.; Sandmann, M.; Steup, M.; Chiarugi, D.; Valleriani, A.: Weak correlation of starch and volume in synchronized photosynthetic cells. Physical Review E 91 (1), 012711 (2015)
Journal Article
Sin, C.; Chiarugi, D.; Valleriani, A.: Single-molecule modeling of mRNA degradation by miRNA: Lessons from data. BMC Systems Biology 9 (Suppl 3), S2 (2015)

Book Chapter (1)

2015
Book Chapter
Chiarugi, D.; Falaschi, M.; Olarte, C.; Palamidessi, C.: A Declarative View of Signaling Pathways. In: Lecture Notes in Computer Science, Vol. 9465. Springer, Cham (2015)
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