Publications of Angelo Valleriani

Valleriani, A.; Li, X.; Kolomeisky, A. B.: Unveiling the hidden structure of complex stochastic biochemical networks. The Journal of Chemical Physics 140 (6), 064101 (2014)

Deneke, C.; Lipowsky, R.; Valleriani, A.: Effect of ribosome shielding on mRNA stability. Physical Biology 10 (4), 046008 (2013)

Deneke, C.; Lipowsky, R.; Valleriani, A.: Complex degradation processes lead to non-exponential decay patterns and age-dependent decay rates of messenger RNA. PLoS One 8 (2), e55442 (2013)

Deneke, C.; Rudorf, S.; Valleriani, A.: Transient Phenomena in Gene Expression after Induction of Transcription. PLoS One 7 (4), e35044 (2012)

Keller, P.; Valleriani, A.: Single-molecule stochastic times in a reversible bimolecular reaction. The Journal of Chemical Physics 137 (8), 084106 (2012)

Rusconi, M.; Valleriani, A.; Dunlop, J. W. C.; Kurths, J.; Weinkamer, R.: Quantitative approach to the stochastics of bone remodeling. EPL 97 (2), 28009 (2012)

Zhang, G.; Fedyunin, I.; Kirchner, S.; Xiao, C. L.; Valleriani, A.; Ignatova, Z.: FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads. Nucleic Acids Research (London) 40 (11), e83 (2012)

Menche, J.; Valleriani, A.; Lipowsky, R.: Sequences of phase transitions in Ising models on correlated networks. Physical Review E 83 (6), 061129 (2011)

Nagar, A.; Valleriani, A.; Lipowsky, R.: Translation by ribosomes with mRNA degradation: exclusion processes on aging tracks. Journal of Statistical Physics 145 (5), pp. 1385 - 1404 (2011)

Rading, M. M.; Engel, T. A.; Lipowsky, R.; Valleriani, A.: Stationary size distributions of growing cells with binary and multiple cell division. Journal of Statistical Physics 145 (1), pp. 1 - 22 (2011)

Valleriani, A.; Zhang, G.; Nagar, A.; Ignatova, Z.; Lipowsky, R.: Length-dependent translation of messenger RNA by ribosomes. Physical Review E 83 (4), 042903 (2011)

Menche, J.; Valleriani, A.; Lipowsky, R.: Asymptotic properties of degree-correlated scale-free networks. Physical Review E 81 (4), 046103 (2010)

Menche, J.; Valleriani, A.; Lipowsky, R.: Dynamical processes on dissortative scale-free networks. EPL 89 (1), 18002 (2010)

Valleriani, A.; Ignatova, Z.; Nagar, A.; Lipowsky, R.: Turnover of messenger RNA: polysome statistics beyond the steady state. EPL 89 (5), 58003 (2010)

Zhang, G.; Fedyunin, I.; Miekley, O.; Valleriani, A.; Moura, A.; Ignatova, Z.: Global and local depletion of ternary complex limits translational elongation. Nucleic Acids Research 38 (14), pp. 4778 - 4787 (2010)

Lipowsky, R.; Beeg, J.; Dimova, R.; Klumpp, S.; Liepelt, S.; Müller, M. J. I.; Valleriani, A.: Active bio-systems: from single motor molecules to cooperative cargo transport. Biophysical Reviews and Letters 4 (1 & 2), pp. 77 - 137 (2009)

Lipowsky, R.; Liepelt, S.; Valleriani, A.: Energy Conversion by Molecular Motors Coupled to Nucleotide Hydrolysis. Journal of Statistical Physics 135 (5-6 Sp. Iss.), pp. 951 - 975 (2009)

Valleriani, A.; Liepelt, S.; Lipowsky, R.: Dwell time distributions for kinesin's mechanical steps. EPL 82 (2), 28011 (2008)

Valleriani, A.; Meene, T.: Multilevel selection in a gradient. Ecological Modelling 208 (2-4), pp. 159 - 164 (2007)

Valleriani, A.: Evolutionarily stable germination strategies with time-correlated yield. Theoretical Population Biology 70 (3), pp. 255 - 261 (2006)