Publications of Daniel Kolarich

Loke, I.; Kolarich, D.; Packer, N. H.; Thaysen-Andersen, M.: Emerging roles of protein mannosylation in inflammation and infection. Molecular Aspects of Medicine 51, pp. 31 - 55 (2016)

Mereiter, S.; Magalhães, A.; Adamczyk, B.; Jin, C.; Almeida, A.; Drici, L.; Ibáñez-Vea, M.; Gomes, C.; Ferreira, J. A.; Afonso, L. P. et al.; Santos, L. L.; Larsen, M. R.; Kolarich, D.; Karlsson, N. G.; Reis, C. A.: Glycomic analysis of gastric carcinoma cells discloses glycans as modulators of RON receptor tyrosine kinase activation in cancer. Biochimica et Biophysica Acta (BBA) - General Subjects 1860 (8), pp. 1795 - 1808 (2016)

Mereiter, S.; Magalhães, A.; Adamczyk, B.; Jin, C.; Almeida, A.; Drici, L.; Ibáñez-Vea, M.; Larsen, M. R.; Kolarich, D.; Karlsson, N. G. et al.; Reis, C. A.: Glycomic and sialoproteomic data of gastric carcinoma cells overexpressing ST3GAL4. Data in Brief 7, pp. 814 - 833 (2016)

Möginger, U.; Resemann, A.; Martin, C. E.; Parameswarappa, S.; Govindan, S.; Wamhoff, E.-C.; Broecker, F.; Suckau, D.; Pereira, C. L.; Chakkumkal, A. et al.; Seeberger, P. H.; Kolarich, D.: Cross Reactive Material 197 glycoconjugate vaccines contain privileged conjugation sites. Scientific Reports 6, 20488 (2016)

Struwe, W. B.; Agravat, S.; Aoki-Kinoshita, K. F.; Campbell, M. P.; Costello, C. E.; Dell, A.; Feizi, T.; Haslam, S. M.; Karlsson, N. G.; Khoo, K.-H. et al.; Kolarich, D.; Liu, Y.; McBride, R.; Novotny, M. V.; Packer, N. H.; Paulson, J. C.; Rapp, E.; Ranzinger, R.; Rudd, P. M.; Smith, D. F.; Tiemeyer, M.; Wells, L.; York, W. S.; Zaia, J.; Kettner, C.: The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets. Glycobiology 26 (9), pp. 907 - 910 (2016)

Ventham, N. T.; Kennedy, N. A.; Adams, A. T.; Kalla, R.; Heath, S.; O'Leary, K. R.; Drummond, H.; Lauc, G.; Campbell, H.; McGovern, D. P. B. et al.; Annese, V.; Zoldoš, V.; Permberton, I. K.; Wuhrer, M.; Kolarich, D.; Fernandes, D. L.; Theorodorou, E.; Merrick, V.; Spencer, D. I.; Gardner, R. A.; Doran, R.; Shubhakar, A.; Boyapati, R.; Rudan, I.; Lionetti, P.; Akmačić, I. T.; Krištić, J.; Vučković, F.; Štambuk, J.; Novokmet, M.; Pučić-Baković, M.; Gornik, O.; Andriulli, A.; Cantoro, L.; Sturniolo, G.; Fiorino, G.; Manetti, N.; Latiano, A.; Kohn, A.; D’Incà, R.; Danese, S.; Arnott, I. D.; Noble, C. L.; Lees, C. W.; Shand, A. G.; Ho, G.-T.; Dunlop, M. G.; Murphy, L.; Gibson, J.; Evenden, L.; Wrobel, N.; Gilchrist, T.; Fawkes, A.; Kammeijer, G. S. M.; Clerc, F.; de Haan, N.; Vojta, A.; Samaržija, I.; Markulin, D.; Klasić, M.; Dobrinić, P.; Aulchenko, Y.; van den Heuve, T.; Jonkers, D.; Pierik, M.; Vatn, S.; Ricanek, P.; Jahnsen, J.; You, P.; Sølvernes, J.; Frengen, A. B.; Tannæs, T. M.; Moen, A. E. F.; Dahl, F. A.; Lindstrøm, J. C.; Ekeland, G. S.; Detlie, T. E.; Keita, Å. V.; Söderholm, J. D.; Hjortswang, H.; Halfvarson, J.; Bergemalm, D.; Gomollón, F.; D'Amato, M.; Törkvist, L.; Hjelm, F.; Gullberg, M.; Nordberg, N.; Ocklind, A.; Pettersson, E.; Ekman, D.; Sundell, M.; Modig, E.; Veillard, A.-C.; Schoemans, R.; Poncelet, D.; Sabatel, C.; Gut, M.; Bayes, M.; Casén, C.; Lindahl, T.; Ciemniejewska, E.; Vatn, M. H.; Wilson, D. C.; Gut, I. G.; Nimmo, E. R.; Satsangi, J.: Integrative epigenome-wide analysis demonstrates that DNA methylation may mediate genetic risk in inflammatory bowel disease. Nature Communications 7, 13507 (2016)

Stavenhagen, K.; Kolarich, D.; Wuhrer, M.: Clinical glycomics employing graphitized carbon liquid chromatography-mass spectrometry. Chromatographia 78 (5-6), pp. 307 - 320 (2015)

Campbell, M. P.; Nguyen-Khuong, T.; Hayes, C. A.; Flowers, S. A.; Alagesan, K.; Kolarich, D.; Packer, N. H.; Karlsson, N. G.: Validation of the curation pipeline of UniCarb-DB: building a global glycan reference MS/MS repository. Biochimica et Biophysica Acta-Proteins and Proteomics 1844 (1), pp. 108 - 116 (2014)

Leitsch, D.; Janssen, B. D.; Kolarich, D.; Johnson, P. J.; Duchene, M.: Trichomonas vaginalis flavin reductase 1 and its role in metronidazole resistance. Molecular Microbiology 91 (1), pp. 198 - 208 (2014)

Leitsch, D.; Sóki, J.; Kolarich, D.; Urbán, E.; Nagy, E.: A study on Nim expression in Bacteroides fragilis. Microbiology/SGM 160, pp. 616 - 622 (2014)

Marco-Ramell, A.; Miller, I.; Nöbauer, K.; Möginger, U.; Segales, J.; Razzazi-Fazeli, E.; Kolarich, D.; Bassols, A.: Proteomics on porcine haptoglobin and IgG/IgA show protein species distribution and glycosylation pattern to remain similar in PCV2-SD infection. Journal of Proteomics 101, pp. 205 - 216 (2014)

Theodoratou, E.; Campbell, H.; Ventham, N. T.; Kolarich, D.; Pucic-Bakovic, M.; Zoldos, V.; Fernandes, D.; Pemberton, I. K.; Rudan, I.; Kennedy, N. A. et al.; Wuhrer, M.; Nimmo, E.; Annese, V.; McGovern, D. P. B.; Satsangi, J.; Lauc, G.: The role of glycosylation in IBD. Nature Reviews Gastroenterology & Hepatology 11 (10), pp. 588 - 600 (2014)

York, W. S.; Agravat, S.; Aoki-Kinoshita, K. F.; McBride, R.; Campbell, M. P.; Costello, C. E.; Dell, A.; Feizi, T.; Haslam, S. M.; Karlsson, N. et al.; Khoo, K.-H.; Kolarich, D.; Liu, Y.; Novotny, M.; Packer, N. H.; Paulson, J. C.; Rapp, E.; Ranzinger, R.; Rudd, P. M.; Smith, D. F.; Struwe, W. B.; Tiemeyer, M.; Wells, L.; Zaia, J.; Kettner, C.: MIRAGE: the minimum information required for a glycomics experiment. Glycobiology 24 (5), pp. 402 - 406 (2014)

Everest-Dass, A. V.; Abrahams, J. L.; Kolarich, D.; Packer, N. H.; Campbell, M. P.: Structural feature ions for Ddstinguishing N- and O-linked glycan isomers by LC-ESI-IT MS/MS. Journal of the American Society for Mass Spectrometry 24 (6), pp. 895 - 906 (2013)

Everest-Dass, A. V.; Kolarich, D.; Campbell, M. P.; Packer, N. H.: Tandem mass spectra of glycan substructures enable the multistage mass spectrometric identification of determinants on oligosaccharides. Rapid Communications in Mass Spectrometry 27 (9), pp. 931 - 939 (2013)

Klatt, S.; Rohe, M.; Alagesan, K.; Kolarich, D.; Konthur, Z.; Hartl, D.: Production of Glycosylated Soluble Amyloid Precursor Protein Alpha (sAPPalpha) in Leishmania tarentolae. Journal of Proteome Research 12 (1), pp. 355 - 362 (2013)

Kolarich, D.; Rapp, E.; Struwe, W. B.; Haslam, S. M.; Zaia, J.; McBride, R.; Agravat, S.; Campbell, M. P.; Kato, M.; Ranzinger, R. et al.; Kettner, C.; York, W. S.: The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting mass-spectrometry-based glycoanalytic data. Molecular and Cellular Proteomics 12 (4), pp. 991 - 995 (2013)

Leymarie, N.; Griffin, P. J.; Jonscher, K.; Kolarich, D.; Orlando, R.; McComb, M.; Zaia, J.; Aguilan, J.; Alley, W. R.; Altmann, F. et al.; Ball, L. E.; Basumallick, L.; Bazemore-Walker, C. R.; Behnken, H.; Blank, M. A.; Brown, K. J.; Bunz, S.-C.; Cairo, C. W.; Cipollo, J. F.; Daneshfar, R.; Desaire, H.; Drake, R. R.; Go, E. P.; Goldman, R.; Gruber, C.; Halim, A.; Hathout, Y.; Hensbergen, P. J.; Horn, D. M.; Hurum, D.; Jabs, W.; Larson, G.; Ly, M.; Mann, B. F.; Marx, K.; Mechref, Y.; Meyer, B.; Moeginger, U.; Neusuess, C.; Nilsson, J.; Novotny, M. V.; Nyalwidhe, J. O.; Packer, N. H.; Pompach, P.; Reiz, B.; Resemann, A.; Rohrer, J. S.; Ruthenbeck, A.; Sanda, M.; Schulz, J. M.; Schweiger-Hufnagel, U.; Sihlbom, C.; Song, E.; Staples, G. O.; Suckau, D.; Tang, H.; Thaysen-Andersen, M.; Viner, R. I.; An, Y.; Valmuv, L.; Wada, Y.; Watson, M.; Windwarder, M.; Whittal, R.; Wuhrer, M.; Zhu, Y.; Zou, C.: Interlaboratory study on differential analysis of protein glycosylation by mass spectrometry: the ABRF glycoprotein research multi-institutional study 2012. Molecular and Cellular Proteomics 12 (10), pp. 2935 - 2951 (2013)

Stavenhagen, K.; Hinneburg, H.; Thaysen-Andersen, M.; Hartmann, L.; Varón Silva, D.; Fuchser, J.; Kaspar, S.; Rapp, E.; Seeberger, P. H.; Kolarich, D.: Quantitative mapping of glycoprotein micro-heterogeneity and macro-heterogeneity: an evaluation of mass spectrometry signal strengths using synthetic peptides and glycopeptides. Journal of Mass Spectrometry 48 (6), pp. 627 - 639 (2013)

Wongtrakul-Kish, K.; Kolarich, D.; Pascovici, D.; Joss, J. L.; Deane, E.; Packer, N. H.: Characterization of N- and O-linked glycosylation changes in milk of the tammar wallaby (Macropus eugenii) over lactation. Glycoconjugate Journal 30 (5), pp. 523 - 536 (2013)