Publications of Markus S. Miettinen

Antila, H.; Dixit, S.; Kav, B.; Madsen, J. J.; Miettinen, M. S.; Ollila, O. H. S.: Evaluating polarizable biomembrane simulations against experiments. Journal of Chemical Theory and Computation 20 (10), pp. 4325 - 4337 (2024)

Helabad Bagherpoor, M.; Matlahov, I.; Kumar, R.; Daldrop, J. O.; Jain, G.; Weingarth, M.; van der Wel, P. C. A.; Miettinen, M. S.: Integrative determination of the atomic structure of mutant huntingtin exon 1 fibrils implicated in Huntington’s disease. Nature Communications 15, 10793 (2024)

Hernández-Sánchez, I.; Rindfleisch, T.; Alpers, J.; Dulle, M.; Garvey, C. J.; Knox-Brown, P.; Miettinen, M. S.; Nagy, G.; Pusterla, J. M.; Rekas, A. et al.; Shou, K.; Stadler, A. M.; Walther, D.; Wolff, M.; Zuther, E.; Thalhammer, A.: Functional in vitro diversity of an intrinsically disordered plant protein during freeze–thawing is encoded by its structural plasticity. Protein Science 33 (5), e4989 (2024)

Kiirikki, A. M.; Antila, H.; Bort, L. S.; Buslaev, P.; Favela-Rosales, F.; Ferreira, T. M.; Fuchs, P. F. J.; Garcia-Fandino, R.; Gushchin, I.; Kav, B. et al.; Kučerka, N.; Kula, P.; Kurki, M.; Kuzmin, A.; Lalitha, A.; Lolicato, F.; Madsen, J. J.; Miettinen, M. S.; Mingham, C.; Monticelli, L.; Nencini, R.; Nesterenko, A. M.; Piggot, T. J.; Piñeiro, Á.; Reuter, N.; Samantray, S.; Suárez-Lestón, F.; Talandashti, R.; Ollila, O. H. S.: Overlay databank unlocks data-driven analyses of biomolecules for all. Nature Communications 15, 1136 (2024)

Lipowsky, R.; Ghosh, R.; Satarifard, V.; Sreekumari, A.; Zamaletdinov, M.; Różycki, B.; Miettinen, M. S.; Grafmüller, A.: Leaflet tensions control the spatio-temporal remodeling of lipid bilayers and nanovesicles. Biomolecules 13 (6), 926 (2023)

Zamaletdinov, M. F.; Miettinen, M. S.; Lipowsky, R.: Probing the elastic response of lipid bilayers and nanovesicles to leaflet tensions via volume per lipid. Soft Matter 19 (36), pp. 6929 - 6944 (2023)

Antila, H.; Wurl, A.; Ollila, O. H. S.; Miettinen, M. S.; Ferreira, T. M.: Rotational decoupling between the hydrophilic and hydrophobic regions in lipid membranes. Biophysical Journal 121, pp. 68 - 78 (2022)

Castillo, S. R.; Rickeard, B. W.; DiPasquale, M.; Nguyen, M. H. L.; Lewis-Laurent, A.; Doktorova, M.; Kav, B.; Miettinen, M. S.; Nagao, M.; Kelley, E. G. et al.; Marquardt, D.: Probing the link between pancratistatin and mitochondrial apoptosis through changes in the membrane dynamics on the nanoscale. Molecular Pharmaceutics 19 (6), pp. 1839 - 1852 (2022)

Antila, H.; M. Ferreira, T.; Ollila, O. H. S.; Miettinen, M. S.: Using open data to rapidly benchmark biomolecular simulations: phospholipid conformational dynamics. Journal of Chemical Information and Modeling 61 (2), pp. 938 - 949 (2021)

Bacle, A.; Buslaev, P.; Garcia-Fandino, R.; Favela-Rosales, F.; Mendes Ferreira, T.; Fuchs, P. F. J.; Gushchin, I.; Javanainen, M.; Kiirikki, A. M.; Madsen, J. J. et al.; Melcr, J.; Milán Rodríguez, P.; Miettinen, M. S.; Ollila, O. H. S.; Papadopoulos, C. G.; Peón, A.; Piggot, T. J.; Piñeiro, Á.; Virtanen, S. I.: Inverse conformational selection in lipid–protein binding. Journal of the American Chemical Society 143 (34), pp. 13701 - 13706 (2021)

Knox-Brown, P.; Rindfleisch, T.; Günther, A.; Balow, K.; Bremer, A.; Walther, D.; Miettinen, M. S.; Hincha, D. K.; Thalhammer, A.: Similar yet different–structural and functional diversity among Arabidopsis thaliana LEA_4 proteins. International Journal of Molecular Sciences 21 (8), 2794 (2020)

Miettinen, M. S.; Ollila, O. H. S.: LDB: lipid databank from the NMRlipids project. Biophysical Journal 116 (3), p. 91A - 91A (2019)

Antila, H.; Buslaev, P.; Favela-Rosales, F.; Mendes Ferreira, T.; Gushchin, I.; Javanainen, M.; Kav, B.; Madsen, J. J.; Melcr, J.; Miettinen, M. S. et al.; Määttä, J.; Nencini, R.; Ollila, O.H. S.; Piggot, T. J.: Headgroup Structure and Cation Binding in Phosphatidylserine Lipid Bilayers. The Journal of Physical Chemistry B 123 (43), pp. 9066 - 9079 (2019)

Miettinen, M. S.; Lipowsky, R.: Bilayer membranes with frequent flip-flops have tensionless leaflets. Nanoletters 19 (8), pp. 5011 - 5016 (2019)

Dasgupta, R.; Miettinen, M. S.; Fricke, N.; Lipowsky, R.; Dimova, R.: The glycolipid GM1 reshapes asymmetric biomembranes and giant vesicles by curvature generation. Proceedings of the National Academy of Sciences of the United States of America 115 (22), pp. 5756 - 5761 (2018)

Eickelmann, S.; Danglad-Flores, J. A.; Chen, G.; Miettinen, M. S.; Riegler, H.: Meniscus shape around nanoparticles embedded in molecularly thin liquid films. Langmuir 34 (38), pp. 11364 - 11373 (2018)

Catte, A.; Girych, M.; Javanainen, M.; Loison, C.; Melcr, J.; Miettinen, M. S.; Monticelli, L.; Maatta, J.; Oganesyan, V. S.; Ollila, O. H. S. et al.; Tynkkynen, J.; Vilov, S.: Molecular electrometer and binding of cations to phospholipid bilayers. Physical Chemistry Chemical Physics 18 (47), pp. 32560 - 32569 (2016)

Botan, A.; Favela-Rosales, F.; Fuchs, P. F. J.; Javanainen, M.; Kanduc, M.; Kulig, W.; Lamber, A.; Loison, C.; Lyubartsev, A.; Miettinen, M. S. et al.; Monticelli, L.; Maatta, J.; Ollila, O. H. S.; Retegan, M.; Rog, T.; Santuz, H.; Tynkkynen, J.: Toward Atomistic Resolution Structure of Phosphatidylcholine Headgroup and Glycerol Backbone at Different Ambient Conditions. The Journal of Physical Chemistry B 119 (49), pp. 15075 - 15088 (2015)

Schulz, J. C. F.; Miettinen, M. S.; Netz, R. R.: Unfolding and folding internal friction of beta-hairpins is smaller than that of alpha-helices. The Journal of Physical Chemistry B 119 (13), pp. 4565 - 4574 (2015)

Mortier, J.; Nyakatura, E. K.; Reimann, O.; Huhmann, S.; Daldrop, J. O.; Baldauf, C.; Wolber, G.; Miettinen, M. S.; Koksch, B.: Coiled-coils in phage display screening: insight into exceptional selectivity provided by molecular dynamics. Journal of Chemical Information and Modeling 55 (3), pp. 495 - 500 (2015)