Publications

52.

Journal Article

Dong, J. J.; Klumpp, S.; Zia, R. K. P.: Entrainment and unit velocity: surprises in an accelerated exclusion process. Physical Review Letters 109 (13), 130602 (2012)

MPG.PuRe

53.

Journal Article

Klumpp, S.: Mechanisms and economy of molecular machines. Physica Scripta T151, 014066 (2012)

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54.

Journal Article

Klumpp, S.; Dong, J. J.; Hwa, T.: On ribosome load, codon usage and protein abundance. PLoS One 7, e48542 (2012)

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55.

Journal Article

Klumpp, S.; Faivre, D.: Interplay of magnetic interactions and active movements in the formation of magnetosome chains. PLoS One 7 (3), e33562 (2012)

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56.

Journal Article

Lechner, S.; Patra, P.; Klumpp, S.; Bertram, R.: Interplay between population dynamics and drug tolerance in Staphylococcus aureus persister cells. Journal of Molecular Microbiology and Biotechnology 22, pp. 381 - 391 (2012)

MPG.PuRe

57.

Journal Article

Marathe, R.; Bierbaum, V.; Gomez, D.; Klumpp, S.: Deterministic and stochastic descriptions of gene expression dynamics. Journal of Statistical Physics 148 (4), pp. 607 - 626 (2012)

MPG.PuRe

58.

Journal Article

Marathe, R.; Gomez, D.; Klumpp, S.: Sources of stochasticity in constitutive and autoregulated gene expression. Physica Scripta T151, 014068 (2012)

MPG.PuRe

59.

Journal Article

Berger, F.; Keller, C.; Müller, M. J. I.; Klumpp, S.; Lipowsky, R.: Co-operative transport by molecular motors. Biochemical Society Transactions 39 (5), pp. 1211 - 1215 (2011)

MPG.PuRe

60.

Journal Article

Klumpp, S.: Growth-rate dependence reveals design principles of plasmid copy number control. PLoS One 6 (5), e20403 (2011)

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61.

Journal Article

Klumpp, S.: Pausing and backtracking in transcription under dense traffic conditions. Journal of Statistical Physics 142 (6), pp. 1252 - 1267 (2011)

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62.

Journal Article

Sahoo, M.; Klumpp, S.: Transcriptional proofreading in dense RNA polymerase traffic. EPL 96 (6), 60004 (2011)

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63.

Journal Article

Klumpp, S.: Immer ans Ganze gekoppelt - wie Zellwachstum genetische Schaltkreise beeinflusst. GIT Labor-Fachzeitschrift 54 (5), pp. 400 - 401 (2010)

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64.

Journal Article

Lipowsky, R.; Beeg, J.; Dimova, R.; Klumpp, S.; Müller, M. J. I.: Cooperative behavior of molecular motors: cargo transport and traffic phenomena. Physica E: Low-Dimensional Systems And Nanostructures 42 (3), pp. 649 - 661 (2010)

MPG.PuRe

65.

Journal Article

Müller, M. J. I.; Klumpp, S.; Lipowsky, R.: Bidirectional transport by molecular motors: enhanced processivity and response to external forces. Biophysical Journal 98 (11), pp. 2610 - 2618 (2010)

MPG.PuRe

66.

Journal Article

Chai, Y.; Klumpp, S.; Müller, M. J. I.; Lipowsky, R.: Traffic by multiple species of molecular motors. Physical Review E 80 (4), 041928 (2009)

MPG.PuRe

67.

Journal Article

Klumpp, S.; Zhang, Z.; Hwa, T.: Growth rate-dependent global effects on gene expression in bacteria. Cell 139 (7), pp. 1366 - 1375 (2009)

MPG.PuRe

68.

Journal Article

Korn, C. B.; Klumpp, S.; Lipowsky, R.; Schwarz, U. S.: Stochastic simulations of cargo transport by processive molecular motors. The Journal of Chemical Physics 131 (24), 245107 (2009)

MPG.PuRe

69.

Journal Article

Lipowsky, R.; Beeg, J.; Dimova, R.; Klumpp, S.; Liepelt, S.; Müller, M. J. I.; Valleriani, A.: Active bio-systems: from single motor molecules to cooperative cargo transport. Biophysical Reviews and Letters 4 (1 & 2), pp. 77 - 137 (2009)

MPG.PuRe

70.

Journal Article

Beeg, J.; Klumpp, S.; Dimova, R.; Gracià, R. S.; Unger, E.; Lipowsky, R.: Transport of beads by several kinesin motors. Biophysical Journal 94 (2), pp. 532 - 541 (2008)

MPG.PuRe

71.

Journal Article

Klumpp, S.; Müller, M. J. I.; Lipowsky, R.: Cooperative transport by small teams of molecular motors. Biophysical Reviews and Letters 1 (4), pp. 353 - 361 (2006)

MPG.PuRe

72.

Journal Article

Lipowsky, R.; Chai, Y.; Klumpp, S.; Liepelt, S.; Müller, M. J. I.: Molecular motor traffic: from biological nanomachines to macroscopic transport. Physica A: Statistical Mechanics and its Applications 372 (1), pp. 34 - 51 (2006)

MPG.PuRe

73.

Journal Article

Klumpp, S.; Lipowsky, R.: Active diffusion of motor particles. Physical Review Letters 95 (26), 268102 (2005)

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74.

Journal Article

Klumpp, S.; Lipowsky, R.: Cooperative cargo transport by several molecular motors. Proceedings of the National Academy of Sciences of the United States of America 102 (48), pp. 17284 - 17289 (2005)

MPG.PuRe

75.

Journal Article

Klumpp, S.; Nieuwenhuizen, T. M.; Lipowsky, R.: Movements of molecular motors: Ratchets, random walks and traffic phenomena. Physica E: Low-Dimensional Systems And Nanostructures 29 (1-2), pp. 380 - 389 (2005)

MPG.PuRe

76.

Journal Article

Klumpp, S.; Nieuwenhuizen, T. M.; Lipowsky, R.: Self-organized density patterns of molecular motors in arrays of cytoskeletal filaments. Biophysical Journal 88 (5), pp. 3118 - 3132 (2005)

MPG.PuRe

77.

Journal Article

Lipowsky, R.; Klumpp, S.: 'Life is motion': multiscale motility of molecular motors. Physica A: Statistical Mechanics and its Applications 352 (1), pp. 53 - 112 (2005)

MPG.PuRe

78.

Journal Article

Müller, M. J. I.; Klumpp, S.; Lipowsky, R.: Molecular motor traffic in a half-open tube. Journal of Physics: Condensed Matter 17 (47), pp. S3839 - S3850 (2005)

MPG.PuRe

79.

Journal Article

Nieuwenhuizen, T. M.; Klumpp, S.; Lipowsky, R.: Walks of molecular motors interacting with immobilized filaments. Physica A: Statistical Mechanics and its Applications 350 (1), pp. 122 - 130 (2005)

MPG.PuRe

80.

Journal Article

Klumpp, S.; Lipowsky, R.: Asymmetric simple exclusion processes with diffusive bottlenecks. Physical Review E 70 (6), 066104 (2004)

MPG.PuRe

81.

Journal Article

Klumpp, S.; Lipowsky, R.: Phase transitions in systems with two species of molecular motors. EPL 66 (1), pp. 90 - 96 (2004)

MPG.PuRe

82.

Journal Article

Nieuwenhuizen, T. M.; Klumpp, S.; Lipowsky, R.: Random walks of molecular motors arising from diffusional encounters with immobilized filaments. Physical Review E 69 (6), 061911 (2004)

MPG.PuRe

83.

Journal Article

Klumpp, S.; Lipowsky, R.: Traffic of molecular motors through tube-like compartments. Journal of Statistical Physics 113 (1-2), pp. 233 - 268 (2003)

MPG.PuRe

84.

Journal Article

Nieuwenhuizen, T. M.; Klumpp, S.; Lipowsky, R.: Walks of molecular motors in two and three dimensions. EPL 58 (3), pp. 468 - 474 (2002)

MPG.PuRe

85.

Journal Article

Klumpp, S.; Mielke, A.; Wald, C.: Noise-induced transport of two coupled particles. Physical Review E 63 (3), 031914 (2001)

MPG.PuRe

86.

Journal Article

Lipowsky, R.; Klumpp, S.; Nieuwenhuizen, T. M.: Random walks of cytoskeletal motors in open and closed compartments. Physical Review Letters 87 (2001)

MPG.PuRe

Book Chapter (5)

87.

Book Chapter

Klumpp, S.; Faivre, D.: Magnetotactic bacteria. In: Microswimmers - From single particle motion to collective behaviour, pp. B5.1 - B5.13 (Eds. Gompper, G.; Bechinger, C.). Forschungszentrum Jülich, Jülich (2015)

MPG.PuRe

88.

Book Chapter

Klumpp, S.; Keller, C.; Berger, F.; Lipowsky, R.: Molecular Motors: Cooperative Phenomena of Multiple Molecular Motors. In: Multiscale Modeling in Biomechanics and Mechanobiology, pp. 27 - 61 (Eds. De, S.; Hwang, W.; Kuhl, E.). Springer, London (2015)

MPG.PuRe

89.

Book Chapter

Faber, M.; Klumpp, S.: RNA folding dynamics studied with structure-based models. In: From Computational Biophysics to Systems Biology (CBSB11), pp. 45 - 48 (Ed. Carloni, P.). Forschungszentrum Jülich, Jülich (2012)

MPG.PuRe

90.

Book Chapter

Müller, M. J. I.; Berger, F.; Klumpp, S.; Lipowsky, R.: Cargo transport by teams of molecular motors: basic mechanisms for intracellular drug delivery. In: Organelle-specific pharmaceutical nanotechnology, pp. 289 - 309 (Eds. Weissig, V.; D'Souza, G. M. G.). Wiley, Hoboken (2010)

MPG.PuRe

91.

Book Chapter

Klumpp, S.; Müller, M. J. I.; Lipowsky, R.: Traffic of molecular motors. In: Traffic and granular flow '05, pp. 251 - 261 (Eds. Schadschneider, A.; Pöschel, T.; Kühne, R.; Schreckenberg, M.; Wolf, D. E.). Springer, Berlin (2007)

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Conference Paper (1)

92.

Conference Paper

Gomez, D.; Marathe, R.; Bierbaum, V.; Klumpp, S.: Modeling Stochastic Gene Expression in Growing Cells. Biophysical Journal (Annual Meeting Abstracts) 104 (2 Suppl. 1), 2832-Plat, pp. 551A - 552A (2013)

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Meeting Abstract (4)

93.

Meeting Abstract

Klumpp, S.; Lefevre, C.; Landau, L.; Codutti, A.; Bennet, M.; Faivre, D.: Magneto-Aerotaxis: Bacterial Motility in Magnetic Fields. In Biophysical Journal, 112 (3) Supplement 1 Ed., p. 567a. Cell Press, Cambridge, Mass. (2017)

MPG.PuRe

94.

Meeting Abstract

Klumpp, S.: Tug-of-War: Mechanical Coordination of Molecular Motors. In Biophysical Journal, 106 (2), p. 10A - 10A. Cell Press, Cambridge, Mass. (2014)

MPG.PuRe

95.

Meeting Abstract

Lutz, B.; Faber, M.; Verma, A.; Klumpp, S.; Schug, A.: Computational Analysis of Co-Transcriptional Riboswitch Folding. In Biophysical Journal, 106 (2), p. 283A - 283A. Cell Press, Cambridge, Mass. (2014)

MPG.PuRe

96.

Meeting Abstract

Berger, F.; Keller, C.; Klumpp, S.; Lipowsky, R.: Distinct transport regimes of two elastically coupled molecular motors. In Biophysical Journal, 104 (2 Suppl. 1), p. 325A - 325A. Cell Press, Cambridge, Mass. (2013)

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