Publications

Publications of Thomas R. Weikl

Journal Article (81)

1.
Journal Article
Kullmann, R.; Delbianco, M.; Roth, C.; Weikl, T. R.: Role of van der Waals, electrostatic, and hydrogen-bond interactions for the relative stability of cellulose Iβ and II crystals. bioRxiv: the preprint server for biology, 2024.03.04.583382 (2024)
2.
Journal Article
Asadollahi, K.; Rajput, S.; de Zhang, L. A.; Ang, C.-S.; Nie, S.; Williamson, N. A.; Griffin, M. D. W.; Bathgate, R. A. D.; Scott, D. J.; Weikl, T. R. et al.; Jameson, G. N. L.; Gooley, P. R.: Unravelling the mechanism of neurotensin recognition by neurotensin receptor 1. Nature Communications 14, 8155 (2023)
3.
Journal Article
Kav, B.; Weikl, T. R.; Schneck, E.: Measuring pico-Newton forces with lipid anchors as force sensors in molecular dynamics simulations. The Journal of Physical Chemistry B 127 (18), pp. 4081 - 4089 (2023)
4.
Journal Article
Pettmann, J.; Awada, L.; Różycki, B.; Huhn, A.; Faour, S.; Kutuzov, M.; Limozin, L.; Weikl, T. R.; van der Merwe, P. A.; Robert, P. et al.; Dushek, O.: Mechanical forces impair antigen discrimination by reducing differences in T-cell receptor/peptide–MHC off-rates. The EMBO Journal 42 (7), e111841 (2023)
5.
Journal Article
Chakrabarti, K. S.; Olsson, S.; Pratihar, S.; Giller, K.; Overkamp, K.; Lee, K. O.; Gapsys, V.; Ryu, K.-S.; de Groot, B. L.; Noé, F. et al.; Becker, S.; Lee, D.; Weikl, T. R.; Griesinger, C.: A litmus test for classifying recognition mechanisms of transiently binding proteins. Nature Communications 13, 3792 (2022)
6.
Journal Article
Weikl, T. R.: A protein curvature for sensing touch. Proceedings of the National Academy of Sciences of the United States of America 119 (42), e2214536119 (2022)
7.
Journal Article
Bonazzi, F.; Hall, C.; Weikl, T. R.: Membrane morphologies induced by mixtures of arc-shaped particles with opposite curvature. Soft Matter 17 (2), pp. 268 - 275 (2021)
8.
Journal Article
Kav, B.; Demé, B.; Gege, C.; Tanaka, M.; Schneck, E.; Weikl, T. R.: Interplay of trans- and cis-interactions of glycolipids in membrane adhesion. Frontiers in Molecular Biosciences 8 (1047), 754654 (2021)
9.
Journal Article
Pandey, P. R.; Różycki, B.; Lipowsky, R.; Weikl, T. R.: Structural variability and concerted motions of the T cell receptor - CD3 complex. eLife 10, e67195 (2021)
10.
Journal Article
Różycki, B.; Weikl, T. R.: Cooperative stabilization of close-contact zones leads to sensitivity and selectivity in T-cell recognition. Cells 10 (5), 1023 (2021)
11.
Journal Article
Kav, B.; Grafmüller, A.; Schneck, E.; Weikl, T. R.: Weak carbohydrate-carbohydrate interactions in membrane adhesion are fuzzy and generic. Nanoscale 12 (33), pp. 17342 - 17353 (2020)
12.
Journal Article
Weikl, T. R.; Hemmateenejad, B.: Accessory mutations balance the marginal stability of the HIV-1 protease in drug resistance. Proteins: Structure, Function, and Bioinformatics 88 (3), pp. 476 - 484 (2020)
13.
Journal Article
Bonazzi, F.; Weikl, T. R.: Membrane morphologies induced by arc-shaped scaffolds are determined by arc angle and coverage. Biophysical Journal 116 (7), pp. 1239 - 1247 (2019)
14.
Journal Article
Mobaraki, N.; Hemmateenejad, B.; Weikl, T. R.; Sakhteman, A.: On the relationship between docking scores and protein conformational changes in HIV-1 protease. Journal of molecular graphics and modelling 91, pp. 186 - 193 (2019)
15.
Journal Article
Steinkühler, J.; Różycki, B.; Alvey, C.; Lipowsky, R.; Weikl, T. R.; Dimova, R.; Discher, D. E.: Membrane fluctuations and acidosis regulate cooperative binding of “marker of self” CD47 with macrophage checkpoint receptor SIRPα. Journal of Cell Science 132 (4), JCS216770 (2019)
16.
Journal Article
Weikl, T. R.; Hu, J.; Kav, B.; Różycki, B.: Binding and segregation of proteins in membrane adhesion: theory, modeling, and simulations. Advances in Biomembranes and Lipid Self-Assembly 30, pp. 159 - 194 (2019)
17.
Journal Article
Bahrami, A. H.; Weikl, T. R.: Curvature-mediated assembly of Janus nanoparticles on membrane vesicles. Nano Letters 18 (2), pp. 1259 - 1263 (2018)
18.
Journal Article
Bassereau, P.; Jin, R.; Baumgart, T.; Deserno, M.; Dimova, R.; Frolov, V. A.; Bashkirov, P. V.; Grubmüller, H.; Jahn, R.; Risselada, H. J. et al.; Johannes, L.; Kozlov, M. M.; Lipowsky, R.; Pucadyil, T. J.; Zeno, W. F.; Stachowiak, J. C.; Stamou, D.; Breuer, A.; Lauritsen, L.; Simon, C.; Sykes, C.; Voth, G. A.; Weikl, T. R.: The 2018 biomembrane curvature and remodeling roadmap. Journal of Physics D: Applied Physics 51 (34), 343001 (2018)
19.
Journal Article
Paul, F.; Noé, F.; Weikl, T. R.: Identifying conformational-selection and induced-fit aspects in the binding-induced folding of PMI from Markov state modeling of atomistic simulations. Journal of Physical Chemistry B 122 (21), pp. 5649 - 5656 (2018)
20.
Journal Article
Sadeghi, M.; Weikl, T. R.; Noe, F.: Particle-based membrane model for mesoscopic simulation of cellular dynamics. The Journal of Chemical Physics 148 (4), 044901 (2018)
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