Publications of Stefan Klumpp

Scott, M.; Klumpp, S.; Mateescu, E. M.; Hwa, T.: Emergence of robust growth laws from optimal regulation of ribosome synthesis. Molecular Systems Biology 10 (8), 747 (2014)

Yuzenkova, Y.; Gamba, P.; Herber, M.; Attaiech, L.; Shafeeq, S.; Kuipers, O. P.; Klumpp, S.; Zenkin, N.; Veening, J.-W.: Control of transcription elongation by GreA determines rate of gene expression in Streptococcus pneumoniae. Nucleic Acids Research 42 (17), pp. 10987 - 10999 (2014)

Berger, F.; Keller, C.; Lipowsky, R.; Klumpp, S.: Elastic coupling effects in cooperative transport by a pair of molecular motors. Cellular and Molecular Bioengineering 6 (1 SI), pp. 48 - 64 (2013)

Dong, J. J.; Klumpp, S.; Zia, R. K. P.: Mass transport perspective on an accelerated exclusion process: Analysis of augmented current and unit-velocity phases. Physical Review E 87 (2), 022146 (2013)

Faber, M.; Klumpp, S.: Kinetic Monte Carlo approach to RNA folding dynamics using structure-based models. PHYSICAL REVIEW E 88 (5), 052701 (2013)

Hintsche, M.; Klumpp, S.: Dilution and the theoretical description of growth-rate dependent gene expression. Journal of Biological Engineering 7 (1), 22 (2013)

Klumpp, S.: A Superresolution Census of RNA Polymerase. Biophysical Journal 105 (12), pp. 2613 - 2614 (2013)

Klumpp, S.; Scott, M.; Pedersen, S.; Hwa, T.: Molecular crowding limits translation and cell growth. Proceedings of the National Academy of Sciences of the United States of America 110 (42), pp. 16754 - 16759 (2013)

Patra, P.; Klumpp, S.: Population dynamics of bacterial persistence. PLoS One 8 (5), e62814 (2013)

Sahoo, M.; Klumpp, S.: Backtracking dynamics of RNA polymerase: pausing and error correction. Journal of Physics: Condensed Matter 25 (37), 374104 (2013)

Vach, P. J.; Brun, N.; Bennet, M.; Bertinetti, L.; Widdrat, M.; Baumgartner, J.; Klumpp, S.; Fratzl, P.; Faivre, D.: Selecting for function: solution synthesis of magnetic nanopropellers. Nano Letters 13 (11), pp. 5373 - 5378 (2013)

Dong, J. J.; Klumpp, S.; Zia, R. K. P.: Entrainment and unit velocity: surprises in an accelerated exclusion process. Physical Review Letters 109 (13), 130602 (2012)

Klumpp, S.: Mechanisms and economy of molecular machines. Physica Scripta T151, 014066 (2012)

Klumpp, S.; Dong, J. J.; Hwa, T.: On ribosome load, codon usage and protein abundance. PLoS One 7, e48542 (2012)

Klumpp, S.; Faivre, D.: Interplay of magnetic interactions and active movements in the formation of magnetosome chains. PLoS One 7 (3), e33562 (2012)

Lechner, S.; Patra, P.; Klumpp, S.; Bertram, R.: Interplay between population dynamics and drug tolerance in Staphylococcus aureus persister cells. Journal of Molecular Microbiology and Biotechnology 22, pp. 381 - 391 (2012)

Marathe, R.; Bierbaum, V.; Gomez, D.; Klumpp, S.: Deterministic and stochastic descriptions of gene expression dynamics. Journal of Statistical Physics 148 (4), pp. 607 - 626 (2012)

Marathe, R.; Gomez, D.; Klumpp, S.: Sources of stochasticity in constitutive and autoregulated gene expression. Physica Scripta T151, 014068 (2012)

Berger, F.; Keller, C.; Müller, M. J. I.; Klumpp, S.; Lipowsky, R.: Co-operative transport by molecular motors. Biochemical Society Transactions 39 (5), pp. 1211 - 1215 (2011)

Klumpp, S.: Growth-rate dependence reveals design principles of plasmid copy number control. PLoS One 6 (5), e20403 (2011)