Publications of Markus S. Miettinen

Mortier, J.; Nyakatura, E. K.; Reimann, O.; Huhmann, S.; Daldrop, J. O.; Baldauf, C.; Wolber, G.; Miettinen, M. S.; Koksch, B.: Coiled-coils in phage display screening: insight into exceptional selectivity provided by molecular dynamics. Journal of Chemical Information and Modeling 55 (3), pp. 495 - 500 (2015)

Fuchs, P. F. J.; Javanainen, M.; Lamberg, A.; Miettinen, M. S.; Monticelli, L.; Maatta, J.; Ollila, O. H. S.; Retegan, M.; Santuz, H.: Open collaboration that uses NMR data to judge the correctness of phospholipid glycerol and head group structures in molecular dynamics simulations. Biophysical Journal 108 (2), p. 411A - 411A (2015)

Miettinen, M. S.; Monticelli, L.; Nedumpully-Govindan, P.; Knecht, V.; Ignatova, Z.: Initiating polyglutamine aggregation - computational clarification of the structural details. Biophysical Journal 108 (2), p. 386A - 386A (2015)

Gerling, U. I. M.; Miettinen, M. S.; Koksch, B.: Concluding the amyloid formation pathway of a coiled-coil-based peptide from the size of the critical nucleus. ChemPhysChem 16 (1), pp. 108 - 114 (2015)

Roethlein, C.; Miettinen, M. S.; Ignatova, Z.: A flexible approach to assess fluorescence decay functions in complex energy transfer systems. BMC Biophysics 8, 5 (2015)

Roethlein, C.; Miettinen, M. S.; Borwankar, T.; Buerger, J.; Mielke, T.; Kumke, M. U.; Ignatova, Z.: Architecture of polyglutamine-containing fibrils from time-resolved fluorescence decay. Journal of Biological Chemistry 289 (39), pp. 26817 - 26828 (2014)

Miettinen, M. S.; Monticelli, L.; Nedumpully-Govindan, P.; Knecht, V.; Ignatova, Z.: Stable polyglutamine dimers can contain β-hairpins with interdigitated side chains but not α-helices, β-nanotubes, β-pseudohelices, or steric zippers. Biophysical Journal 106 (8), pp. 1721 - 1728 (2014)

Javanainen, M.; Hammaren, H.; Monticelli, L.; Jeon, J.-H.; Miettinen, M. S.; Martinez-Seara, H.; Metzler, R.; Vattulainen, I.: Anomalous and normal diffusion of proteins and lipids in crowded lipid membranes. Faraday Discussions 161, pp. 397 - 417 (2013)

Miettinen, M. S.; Knecht, V.; Monticelli, L.; Ignatova, Z.: Assessing polyglutamine conformation in the nucleating event by molecular dynamics simulations. The Journal of Physical Chemistry B 116 (34), pp. 10259 - 10265 (2012)

Miettinen, M. S.; Knecht, V.; Monticelli, L.; Ignatova, Z.: Assessing polyglutamine conformation in the nucleating event by molecular dynamics simulations. The Journal of Physical Chemistry B 116 (34), pp. 10259 - 10265 (2012)

Wong-ekkabut, J.; Miettinen, M. S.; Dias, C.; Karttunen, M.: Static charges cannot drive a continuous flow of water molecules through a carbon nanotube. Nature Nanotechnology 5 (8), pp. 555 - 557 (2010)

Niemela, P. S.; Miettinen, M. S.; Monticelli, L.; Hammaren, H.; Bjelkmar, P.; Murtola, T.; Lindahl, E.; Vattulainen, I.: Membrane proteins diffuse as dynamic complexes with lipids. Journal of the American Chemical Society 132 (22), pp. 7574 - 7575 (2010)

Apajalahti, T.; Niemela, P.; Govindan, P. N.; Miettinen, M. S.; Salonen, E.; Marrink, S.-J.; Vattulainen, I.: Concerted diffusion of lipids in raft-like membranes. Faraday Discussions 144, pp. 411 - 430 (2010)

Miettinen, M. S.; Gurtovenko, A. A.; Vattulainen, I.; Karttunen, M.: Ion dynamics in cationic lipid bilayer systems in saline solutions. The Journal of Physical Chemistry B 113 (27), pp. 9226 - 9234 (2009)

Gurtovenko, A. A.; Miettinen, M. S.; Karttunen, M.; Vattulainen, I.: Effect of monovalent salt on cationic lipid membranes as revealed by molecular dynamics simulations. The Journal of Physical Chemistry B 109 (44), pp. 21126 - 21134 (2005)

Miettinen, M. S.: Refined molecular dynamics simulations of phospholipid bilayers. In: Advances in Biomembranes and Lipid Self-Assembly, Vol. 30, pp. 1 - 38 (2019)

Laine, H.; Lahti, L.; Lehto, A.; Ollila, S.; Miettinen, M. S.: Beyond open access: the changing culture of producing and disseminating scientific knowledge. In: Proceedings of the 19th International Academic Mindtrek Conference, pp. 202 - 205. Association for Computing Machinery, Tampere, Finland (2015)

Antila, H.; Miettinen, M. S.: Data-driven development of lipid force fields for molecular dynamics simulations. In Biophysical Journal, 118 (3, Supplement 1), pp. 141a - 142a. Cell Press, Cambridge, Mass. (2020)

Miettinen, M. S.; Lipowsky, R.: Spontaneous curvature generation in asymmetric lipid bilayers with tensionless leaflets. In Biophysical Journal, 118 (3, Supplement 1). Cell Press, Cambridge, Mass. (2020)

Schullian, O.; Lipowsky, R.; Miettinen, M. S.: Formally correct solutions to local stress equation can be non-physical. In Biophysical Journal, 118 (3, Supplement 1), p. 89a. Cell Press, Cambridge, Mass. (2020)