Publikationen

Zeitschriftenartikel (42)

  1. 2015
    Zeitschriftenartikel
    Agudo-Canalejo, J.; Lipowsky, R.: Critical Particle Sizes for the Engulfment of Nanoparticles by Membranes and Vesicles with Bilayer Asymmetry. ACS Nano 9 (4), S. 3704 - 3720 (2015)
  2. Zeitschriftenartikel
    Agudo-Canalejo, J.; Lipowsky, R.: Adhesive Nanoparticles as Local Probes of Membrane Curvature. Nano Letters 15 (10), S. 7168 - 7173 (2015)
  3. Zeitschriftenartikel
    Bennet, M.; Bertinetti, L.; Neely, R. K.; Schertel, A.; Körnig, A.; Flors, C.; Müller, F. D.; Schüler, D.; Klumpp, S.; Faivre, D.: Biologically controlled synthesis and assembly of magnetite nanoparticles. Faraday Discussions 181, S. 71 - 83 (2015)
  4. Zeitschriftenartikel
    Berger, F.; Keller, C.; Klumpp, S.; Lipowsky, R.: External forces influence the elastic coupling effects during cargo transport by molecular motors. Physical Review E 91 (2), 022701 (2015)
  5. Zeitschriftenartikel
    Bierbaum, V.; Klumpp, S.: Impact of the cell division cycle on gene circuits. Physical Biology 12 (6), 066003 (2015)
  6. Zeitschriftenartikel
    Bodei, C.; Bortolussi, L.; Chiarugi, D.; Guerriero, M. L.; Policriti, A.; Romanel, A.: On the impact of discreteness and abstractions on modelling noise in gene regulatory networks. Computational Biology and Chemistry 56, S. 98 - 108 (2015)
  7. Zeitschriftenartikel
    Chiarugi, D.; Falaschi, M.; Hermith, D.; Olarte, C.: Verification of Spatial and Temporal Modalities in Biochemical Systems. Electronic Notes in Theoretical Computer Science 316, S. 29 - 44 (2015)
  8. Zeitschriftenartikel
    Chiarugi, D.; Falaschi, M.; Hermith, D.; Olarte, C.; Torella, L.: Modelling non-Markovian dynamics in biochemical reactions. BMC Systems Biology 9 (Suppl 3), S8 (2015)
  9. Zeitschriftenartikel
    Curtis, E. M.; Bahrami, A. H.; Weikl, T. R.; Hall, C. K.: Modeling nanoparticle wrapping or translocation in bilayer membranes. Nanoscale 7 (34), S. 14505 - 14514 (2015)
  10. Zeitschriftenartikel
    Dontsova, D.; Pronkin, S.; Wehle, M.; Chen, Z.; Fettkenhauer, C.; Clavel, G.; Antonietti, M.: Triazoles: a new class of precursors for the synthesis of negatively charged carbon nitride derivatives. Chemistry of Materials 27 (15), S. 5170 - 5179 (2015)
  11. Zeitschriftenartikel
    Ghani, F.; Gojzewski, H.; Riegler, H.: Nucleation and growth of copper phthalocyanine aggregates deposited from solution on planar surfaces. Applied Surface Science 351, S. 969 - 976 (2015)
  12. Zeitschriftenartikel
    Gomez, D.; Klumpp, S.: Biochemical reactions in crowded environments: Revisiting the effects of volume exclusion with simulations. Frontiers in Physics 3, 45 (2015)
  13. Zeitschriftenartikel
    Hu, J.; Xu, G.-K.; Lipowsky, R.; Weikl, T. R.: Binding kinetics of membrane-anchored receptors and ligands: Molecular dynamics simulations and theory. The Journal of Chemical Physics 143 (24), 243137 (2015)
  14. Zeitschriftenartikel
    Jehannin, M.; Charton, S.; Karpitschka, S.; Zemb, T.; Möhwald, H.; Riegler, H.: Periodic Precipitation Patterns during Coalescence of Reacting Sessile Droplets. Langmuir 31 (42), S. 11484 - 11490 (2015)
  15. Zeitschriftenartikel
    Karpitschka, S.; Weber, C. M.; Riegler, H.: Spin casting of dilute solutions: Vertical composition profile during hydrodynamic-evaporative film thinning. Chemical Engineering Science 129, S. 243 - 248 (2015)
  16. Zeitschriftenartikel
    Keller, P.; Rœlly, S.; Valleriani, A.: A Quasi Random Walk to Model a Biological Transport Process. Methodology and Computing in Applied Probability 17 (1), S. 125 - 137 (2015)
  17. Zeitschriftenartikel
    Keller, P.; Rœlly, S.; Valleriani, A.: On Time Duality for Markov Chains. Stochastic Models 31 (1), S. 98 - 118 (2015)
  18. Zeitschriftenartikel
    Kiani, B.; Faivre, D.; Klumpp, S.: Elastic properties of magnetosome chains. New Journal of Physics 17 (4), 043007 (2015)
  19. Zeitschriftenartikel
    Klumpp, S.; Kiani, B.; Vach, P. J.; Faivre, D.: Navigation with magnetic nanoparticles: magnetotactic bacteria and magnetic micro-robots. Physica Scripta 2015 (T165), 014044 (2015)
  20. Zeitschriftenartikel
    Knorr, R. L.; Lipowsky, R.; Dimova, R.: Autophagosome closure requires membrane scission. Autophagy 11 (11), S. 2134 - 2137 (2015)
  21. Zeitschriftenartikel
    Lefèvre, C. T.; Bennet, M.; Klumpp, S.; Faivre, D.: Positioning the Flagellum at the Center of a Dividing Cell To Combine Bacterial Division with Magnetic Polarity. mBio 6 (2), e02286-14 (2015)
  22. Zeitschriftenartikel
    Nicholas, M. P.; Berger, F.; Rao, L.; Brenner, S.; Cho, C.; Gennerich, A.: Cytoplasmic dynein regulates its attachment to microtubules via nucleotide state-switched mechanosensing at multiple AAA domains. Proceedings of the National Academy of Sciences 112 (20), S. 6371 - 6376 (2015)
  23. Zeitschriftenartikel
    Niedermayer, T.; Lipowsky, R.: Association-dissociation process with aging subunits: Recursive solution. Physical Review E 92 (5), 052137 (2015)
  24. Zeitschriftenartikel
    Paradisi, P.; Allegrini, P.; Chiarugi, D.: A renewal model for the emergence of anomalous solute crowding in liposomes. BMC Systems Biology 9 (Suppl 3), S7 (2015)
  25. Zeitschriftenartikel
    Patra, P.; Klumpp, S.: Emergence of phenotype switching through continuous and discontinuous evolutionary transitions. Physical Biology 12 (4), 046004 (2015)
  26. Zeitschriftenartikel
    Pinchasik, B.-E. S.; Steinkühler, J.; Wuytens, P. C.; Skirtach, A. G.; Fratzl, P.; Möhwald, H.: From beetles in nature to the lab: actuating underwater locomotion on hydrophobic surfaces. Langmuir 31 (51), S. 13734 - 13742 (2015)
  27. Zeitschriftenartikel
    Pithan, L.; Meister, E.; Jin, C.; Weber, C.; Zykov, A.; Sauer, K.; Brütting, W.; Riegler, H.; Opitz, A.; Kowarik, S.: Thermally driven smoothening of molecular thin films: Structural transitions in n-alkane layers studied in real-time. The Journal of Chemical Physics 143 (16), 164707 (2015)
  28. Zeitschriftenartikel
    Rading, M. M.; Sandmann, M.; Steup, M.; Chiarugi, D.; Valleriani, A.: Weak correlation of starch and volume in synchronized photosynthetic cells. Physical Review E 91 (1), 012711 (2015)
  29. Zeitschriftenartikel
    Robalo, J. R.; Ramalho, J. P. P.; Huster, D.; Loura, L. M. S.: Influence of the sterol aliphatic side chain on membrane properties: a molecular dynamics study. Physical Chemistry Chemical Physics 17 (35), S. 22736 - 22748 (2015)
  30. Zeitschriftenartikel
    Różycki, B.; Lipowsky, R.: Spontaneous curvature of bilayer membranes from molecular simulations: Asymmetric lipid densities and asymmetric adsorption. The Journal of Chemical Physics 142 (5), 054101 (2015)
  31. Zeitschriftenartikel
    Rudorf, S.; Lipowsky, R.: Protein Synthesis in E. coli: Dependence of Codon-Specific Elongation on tRNA Concentration and Codon Usage. PLoS One 10 (8), e0134994 (2015)
  32. Zeitschriftenartikel
    Sahoo, M.; Dong, J.; Klumpp, S.: Dynamic blockage in an exclusion process. Journal of Physics A: Mathematical and Theoretical 48 (1), 015007 (2015)
  33. Zeitschriftenartikel
    Sauter, J.; Grafmüller, A.: Solution Properties of Hemicellulose Polysaccharides with Four Common Carbohydrate Force Fields. Journal of Chemical Theory and Computation 11 (4), S. 1765 - 1774 (2015)
  34. Zeitschriftenartikel
    Siebert, M.; Böhme, M. A.; Driller, J. H.; Babikir, H.; Mampell, M. M.; Rey, U.; Ramesh, N.; Matkovic, T.; Holton, N.; Reddy-Alla, S. et al.; Göttfert, F.; Kamin, D.; Quentin, C.; Klinedinst, S.; Andlauer, T. F.; Hell, S. W.; Collins, C. A.; Wahl, M. C.; Loll, B.; Sigrist, S. J.: A high affinity RIM-binding protein/Aplip1 interaction prevents the formation of ectopic axonal active zones. eLife 4, e06935 (2015)
  35. Zeitschriftenartikel
    Sin, C.; Chiarugi, D.; Valleriani, A.: Single-molecule modeling of mRNA degradation by miRNA: Lessons from data. BMC Systems Biology 9 (Suppl 3), S2 (2015)
  36. Zeitschriftenartikel
    Sosale, N. G.; Rouhiparkouhi, T.; Bradshaw, A. M.; Dimova, R.; Lipowsky, R.; Discher, D. E.: Cell rigidity and shape override CD47's "sell"-signaling in phagocytosis by hyperactivating myosin-II. Blood 125 (3), S. 542 - 552 (2015)
  37. Zeitschriftenartikel
    Soulié, V.; Karpitschka, S.; Lequien, F.; Prene, P.; Zemb, T.; Möhwald, H.; Riegler, H.: The evaporation behavior of sessile droplets from aqueous saline solutions. Physical Chemistry Chemical Physics 17 (34), S. 22296 - 22303 (2015)
  38. Zeitschriftenartikel
    Vach, P. J.; Fratzl, P.; Klumpp, S.; Faivre, D.: Fast magnetic micropropellers with random shapes. Nano Letters 15, S. 7064 - 7070 (2015)
  39. Zeitschriftenartikel
    Valleriani, A.: Circular analysis in complex stochastic systems. Scientific Reports 5, 17986 (2015)
  40. Zeitschriftenartikel
    Xu, G.-K.; Hu, J.; Lipowsky, R.; Weikl, T. R.: Binding constants of membrane-anchored receptors and ligands: A general theory corroborated by Monte Carlo simulations. The Journal of Chemical Physics 143 (24), 243136 (2015)
  41. Zeitschriftenartikel
    Yu, M.; Lira, R. B.; Riske, K. A.; Dimova, R.; Lin, H.: Ellipsoidal Relaxation of Deformed Vesicles. Physical Review Letters 115, 128303 (2015)
  42. Zeitschriftenartikel
    Zhao, Z.; Ji, X.; Dimova, R.; Lipowsky, R.; Liu, Y.: Viscoelasticity of Poly(ethylene glycol) Solutions on Supported Lipid Bilayers via Quartz Crystal Microbalance with Dissipation. Macromolecules 48 (6), S. 1824 - 1831 (2015)

Buchkapitel (3)

  1. 2015
    Buchkapitel
    Chiarugi, D.; Falaschi, M.; Olarte, C.; Palamidessi, C.: A Declarative View of Signaling Pathways. In: Lecture Notes in Computer Science, Bd. 9465. Springer, Cham (2015)
  2. Buchkapitel
    Klumpp, S.; Faivre, D.: Magnetotactic bacteria. In: Microswimmers - From single particle motion to collective behaviour, S. B5.1 - B5.13 (Hg. Gompper, G.; Bechinger, C.). Forschungszentrum Jülich, Jülich (2015)
  3. Buchkapitel
    Klumpp, S.; Keller, C.; Berger, F.; Lipowsky, R.: Molecular Motors: Cooperative Phenomena of Multiple Molecular Motors. In: Multiscale Modeling in Biomechanics and Mechanobiology, S. 27 - 61 (Hg. De, S.; Hwang, W.; Kuhl, E.). Springer, London (2015)

Konferenzbeitrag (1)

  1. 2015
    Konferenzbeitrag
    Fricke, N.; Dimova, R.: How GM1 Affects the Phase State and Mechanical Properties of Phospholipid Membranes. Biophysical Journal (Annual Meeting Abstracts) 108 (2), S. 18A - 18A (2015)

Meeting Abstract (4)

  1. 2015
    Meeting Abstract
    Dasgupta, R.; Lipowsky, R.; Dimova, R.: Measuring the Intrinsic Curvature of Ganglioside GM1. In Biophysical Journal (Annual Meeting Abstracts), 108 (2), S. 239A - 239A. Biophysical Society, Bethesda, MD (2015)
  2. Meeting Abstract
    Georgiev, V.; Bleger, D.; Grafmüller, A.; Hecht, S.; Dimova, R.: Light-Induced Transformations in Lipid Membranes. In Biophysical Journal (Annual Meeting Abstracts), 108 (2), S. 240A - 240A. Biophysical Society, Bethesda, MD (2015)
  3. Meeting Abstract
    Lira, R. B.; Dimova, R.; Riske, K. A.: Protein-Free Membrane Fusion Probed by Single Giant Unilamellar Vesicle Imaging - the Role of Membrane Charge. In Biophysical Journal (Annual Meeting Abstracts), 108 (2), 911-Plat, S. 181A - 181A. Biophysical Society, Bethesda, MD (2015)
  4. Meeting Abstract
    Steinkühler, J.; Agudo-Canalejo, J.; Lipowsky, R.; Dimova, R.: Variable Adhesion Strength for Giant Unilamellar Vesicles Controlled by External Electrostatic Potentials. In Biophysical Journal (Annual Meeting Abstracts), 108 (2), S. 402A - 402A. 59th Annual Meeting of the Biophysical-Society, Baltimore, MD, 07. Februar 2015 - 11. Februar 2015. Biophysical Society, Bethesda, MD (2015)

Hochschulschrift - Doktorarbeit (3)

  1. 2015
    Hochschulschrift - Doktorarbeit
    Faber, M.: Folding dynamics of RNA secondary structures. A structure based approach. Dissertation, Universität Potsdam, Potsdam (2015)
  2. Hochschulschrift - Doktorarbeit
    Jin, C.: Theoretical and Experimental Study of Capillary Effect on Melting. Dissertation, Universität Potsdam, Potsdam (2015)
  3. Hochschulschrift - Doktorarbeit
    Rudorf, S.: Protein Synthesis by Ribosomes. Dissertation, Universität Potsdam, Potsdam (2015)
 
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