Publikationen

Zeitschriftenartikel (49)

  1. 2016
    Zeitschriftenartikel
    Adhikari, U.; Goliaei, A.; Tsereteli, L.; Berkowitz, M. L.: Properties of Poloxamer Molecules and Poloxamer Micelles Dissolved in Water and Next to Lipid Bilayers: Results from Computer Simulations. The Journal of Physical Chemistry B 120 (26), S. 5823 - 5830 (2016)
  2. Zeitschriftenartikel
    Agudo-Canalejo, J.; Lipowsky, R.: Stabilization of membrane necks by adhesive particles, substrate surfaces, and constriction forces. Soft Matter 12 (39), S. 8155 - 8166 (2016)
  3. Zeitschriftenartikel
    Bahrami, A. H.; Lipowsky, R.; Weikl, T. R.: The role of membrane curvature for the wrapping of nanoparticles. Soft Matter 12 (2), S. 581 - 587 (2016)
  4. Zeitschriftenartikel
    Bartholomäus, A.; Fedyunin, I.; Feist, P.; Sin, C.; Zhang, G.; Valleriani, A.; Ignatova, Z.: Bacteria differently regulate mRNA abundance to specifically respond to various stresses. Philosophical Transactions of the Royal Society of London - Series A: Mathematical Physical and Engineering Sciences 374 (2063), 20150069 (2016)
  5. Zeitschriftenartikel
    Bhatia, T.; Cornelius, F.; Brewer, J.; Bagatolli, L. A.; Simonsen, A. C.; Ipsen, J. H.; Mouritsen, O. G.: Spatial distribution and activity of Na +/K +-ATPase in lipid bilayer membranes with phase boundaries. Biochimica et Biophysica Acta (BBA) - Biomembranes 1858 (6), S. 1390 - 1399 (2016)
  6. Zeitschriftenartikel
    Brilliantov, N. V.; Budkov, Y. A.; Seidel, C.: Generation of mechanical force by grafted polyelectrolytes in an electric field. Physical Review E 93 (3), 032505 (2016)
  7. Zeitschriftenartikel
    Brilliantov, N. V.; Budkov, Y. A.; Seidel, C.: Generation of mechanical force by grafted polyelectrolytes in an electric field: application to polyelectrolyte-based nano-devices. Philosophical Transactions of the Royal Society of London - Series A: Mathematical Physical and Engineering Sciences 374 (2080), 20160143 (2016)
  8. Zeitschriftenartikel
    Canto, A. M.T.M. d.; Robalo, J. R.; Santos, P. D.; Carvalho, A. J. P.; Ramalho, J.P. P.; Loura, L. M.S.: Diphenylhexatriene membrane probes DPH and TMA-DPH: A comparative molecular dynamics simulation study. Biochimica et Biophysica Acta - Biomembranes 1858 (11), S. 2647 - 2661 (2016)
  9. Zeitschriftenartikel
    Catte, A.; Girych, M.; Javanainen, M.; Loison, C.; Melcr, J.; Miettinen, M. S.; Monticelli, L.; Maatta, J.; Oganesyan, V. S.; Ollila, O. H. S. et al.; Tynkkynen, J.; Vilov, S.: Molecular electrometer and binding of cations to phospholipid bilayers. Physical Chemistry Chemical Physics 18 (47), S. 32560 - 32569 (2016)
  10. Zeitschriftenartikel
    Derakhshani-Molayousefi, M.; Kashefolgheta, S.; Eilers, J. E.; Lu, Y.: Computational Replication of the Primary Isotope Dependence of Secondary Kinetic Isotope Effects in Solution Hydride Transfer Reactions: Supporting the Isotopically Different Tunneling Ready State Conformations. The Journal of Physical Chemistry A 120 (25), S. 4277 - 4284 (2016)
  11. Zeitschriftenartikel
    Feldmann, D.; Maduar, S. R.; Santer, M.; Lomadze, N.; Vinogradova, O. I.; Santer, S.: Manipulation of small particles at solid liquid interface: light driven diffusioosmosis. Scientific Reports 6, 36443 (2016)
  12. Zeitschriftenartikel
    Fricke, N.; Dimova, R.: GM1 Softens POPC Membranes and Induces the Formation of Micron-Sized Domains. Biophysical Journal 111 (9), S. 1935 - 1945 (2016)
  13. Zeitschriftenartikel
    Gomez, D.; Klumpp, S.: Facilitated diffusion in the presence of obstacles on the DNA. Physical Chemistry Chemical Physics 18 (16), S. 11184 - 11192 (2016)
  14. Zeitschriftenartikel
    Jin, C.; Riegler, H.: Morphological Transitions During Melting of Small Cylindrical Aggregates. The Journal of Physical Chemistry C 120 (30), S. 16815 - 16821 (2016)
  15. Zeitschriftenartikel
    Kang, Y.; Gohlke, U.; Engström, O.; Hamark, C.; Scheidt, T.; Kunstmann, S.; Heinemann, U.; Widmalm, G.; Santer, M.; Barbirz, S.: Bacteriophage Tailspikes and Bacterial O-Antigens as a Model System to Study Weak-Affinity Protein–Polysaccharide Interactions. The Journal of Organic Chemistry 138 (29), S. 9109 - 9118 (2016)
  16. Zeitschriftenartikel
    Kav, B.; Ozturk, M.; Kabakcioglu, A.: Function changing mutations in glucocorticoid receptor evolution correlate with their relevance to mode coupling. Proteins: Structure, Function, and Bioinformatics 84 (5), S. 655 - 665 (2016)
  17. Zeitschriftenartikel
    Klumpp, S.; Faivre, D.: Magnetotactic bacteria Magnetic navigation on the microscale. European Physical Journal - Special Topics 225 (11), S. 2173 - 2188 (2016)
  18. Zeitschriftenartikel
    Krepel, D.; Gomez, D.; Klumpp, S.; Levy, Y.: Mechanism of Facilitated Diffusion during a DNA Search in Crowded Environments. The Journal of Physical Chemistry B 120 (43), S. 11113 - 11122 (2016)
  19. Zeitschriftenartikel
    Kubsch, B.; Robinson, T.; Lipowsky, R.; Dimova, R.: Solution Asymmetry and Salt Expand Fluid-Fluid Coexistence Regions of Charged Membranes. Biophysical Journal 110 (12), S. 2581 - 2584 (2016)
  20. Zeitschriftenartikel
    Lawatscheck, C.; Pickhardt, M.; Wieczorek, S.; Grafmüller, A.; Mandelkow, E.; Börner, H. G.: Generalizing the Concept of Specific Compound Formulation Additives towards Non-Fluorescent Drugs: A Solubilization Study on Potential Anti-Alzheimer-Active Small-Molecule Compounds. Angewandte Chemie International Edition 55 (30), S. 8752 - 8756 (2016)
  21. Zeitschriftenartikel
    Lira, R. B. d.; Steinkühler, J.; Knorr, R. L.; Dimova, R.; Riske, K. A.: Posing for a picture: vesicle immobilization in agarose gel. Scientific Reports 6, 25254 (2016)
  22. Zeitschriftenartikel
    Liu, Y.; Agudo-Canalejo, J.; Grafmüller, A.; Dimova, R.; Lipowsky, R.: Patterns of Flexible Nanotubes Formed by Liquid-Ordered and Liquid-Disordered Membranes. ACS Nano 10 (1), S. 463 - 474 (2016)
  23. Zeitschriftenartikel
    Luo, C.; Kröger, M.; Sommer, J.-U.: Entanglements and Crystallization of Concentrated Polymer Solutions: Molecular Dynamics Simulations. Macromolecules 49 (23), S. 9017 - 9025 (2016)
  24. Zeitschriftenartikel
    McShane, E.; Sin, C.; Zauber, H.; Wells, J.; Donnelly, N.; Wang, X.; Hou, J.; Chen, W.; Storchova, Z.; Marsh, J. et al.; Valleriani, A.; Selbach, M.: Kinetic Analysis of Protein Stability Reveals Age-Dependent Degradation. Cell 167 (3), S. 803 - 815.e21 (2016)
  25. Zeitschriftenartikel
    Memczak, H.; Lauster, D.; Kar, P.; Di Lella, S.; Volkmer, R.; Knecht, V.; Herrmann, A.; Ehrentreich-Förster, E.; Bier, F. F.; Stöcklein, W. F. M.: Anti-Hemagglutinin Antibody Derived Lead Peptides for Inhibitors of Influenza Virus Binding. PLoS One 11 (7), e0159074 (2016)
  26. Zeitschriftenartikel
    Molcan, M.; Gojzewski, H.; Skumiel, A.; Dutz, S.; Kovac, J.; Kubovcikova, M.; Kopcansky, P.; Vekas, L.; Timko, M.: Energy losses in mechanically modified bacterial magnetosomes. Journal of Physics D: Applied Physics 49 (36), 365002 (2016)
  27. Zeitschriftenartikel
    Mousavi, M. P. S.; Kashef Ol Gheta, S.; Stein, A.; Bühlmann, P.: Electrochemical Stability of Quaternary Ammonium Cations: An Experimental and Computational Study. Journal of the Electrochemical Society 163 (2), S. H74 - H80 (2016)
  28. Zeitschriftenartikel
    Mousavi, M. P. S.; Wilson, B. E.; Kashefolgheta, S.; Anderson, E.; He, S.; Bühlmann, P.; Stein, A.: Ionic Liquids as Electrolytes for Electrochemical Double-Layer Capacitors: Structures that Optimize Specific Energy. ACS Applied Materials and Interfaces 8 (5), S. 3396 - 3406 (2016)
  29. Zeitschriftenartikel
    Olarte, C.; Chiarugi, D.; Falaschi, M.; Hermith, D.: A proof theoretic view of spatial and temporal dependencies in biochemical systems. Theoretical Computer Science 641, S. 25 - 42 (2016)
  30. Zeitschriftenartikel
    Paul, F.; Weikl, T. R.: How to Distinguish Conformational Selection and Induced Fit Based on Chemical Relaxation Rates. PLoS Computational Biology 12 (9), e1005067 (2016)
  31. Zeitschriftenartikel
    Reinhardt, A.; Wehle, M.; Geißner, A.; Crouch, E. C.; Kang, Y.; Yang, Y.; Chakkumkal, A.; Santer, M.; Seeberger, P. H.: Structure binding relationship of human surfactant protein D and various lipopolysaccharide inner core structures. Journal of Structural Biology 195 (3), S. 387 - 395 (2016)
  32. Zeitschriftenartikel
    Różycki, B.; Lipowsky, R.: Membrane curvature generated by asymmetric depletion layers of ions, small molecules, and nanoparticles. The Journal of Chemical Physics 145 (7), 074117 (2016)
  33. Zeitschriftenartikel
    Rusconi, M.; Valleriani, A.: Predict or classify: The deceptive role of time-locking in brain signal classification. Scientific Reports 6, 28236 (2016)
  34. Zeitschriftenartikel
    Sadeghi, J.; Khurshudyan, M.; Farahani, H.: Phenomenological Varying Modified Chaplygin Gas with Variable G and Λ: Toy Models for Our Universe. International Journal of Theoretical Physics, Group Theory and Nonlinear Optics 55 (1), S. 81 - 97 (2016)
  35. Zeitschriftenartikel
    Sadej, M.; Gojzewski, H.; Andrzejewska, E.: Photocurable polymethacrylate-silica nanocomposites: correlation between dispersion stability, curing kinetics, morphology and properties. Journal of Polymer Research 23 (6), 116 (2016)
  36. Zeitschriftenartikel
    Sahoo, M.; Klumpp, S.: Asymmetric exclusion process with a dynamic roadblock and open boundaries. Journal of Physics A: Mathematical and Theoretical 49 (31), 315001 (2016)
  37. Zeitschriftenartikel
    Sauter, J.; Grafmüller, A.: Predicting Chemical Potential and Osmotic Pressure of Polysaccharide Solutions by Molecular Simulations. Journal of Chemical Theory and Computation 12 (9), S. 4375 - 4384 (2016)
  38. Zeitschriftenartikel
    Schimka, S.; Santer, S. A.; Mujkic-Ninnemann, N.; Bléger, D.; Hartmann, L.; Wehle, M.; Lipowsky, R.; Santer, M.: Photosensitive Peptidomimetic for Light-Controlled, Reversible DNA Compaction. Biomacromolecules 17 (6), S. 1959 - 1968 (2016)
  39. Zeitschriftenartikel
    Sin, C.; Chiarugi, D.; Valleriani, A.: Quantitative assessment of ribosome drop-off in E. coli. Nucleic Acids Research (London) 44 (6), S. 2528 - 2537 (2016)
  40. Zeitschriftenartikel
    Sin, C.; Chiarugi, D.; Valleriani, A.: Degradation Parameters from Pulse-Chase Experiments. PLoS One 11 (5), e0155028 (2016)
  41. Zeitschriftenartikel
    Steinkühler, J.; Agudo-Canalejo, J.; Lipowsky, R.; Dimova, R.: Modulating Vesicle Adhesion by Electric Fields. Biophysical Journal 111 (7), S. 1454 - 1464 (2016)
  42. Zeitschriftenartikel
    Sturzenegger, F.; Robinson, T.; Hess, D.; Dittrich, P. S.: Membranes under shear stress: visualization of non-equilibrium domain patterns and domain fusion in a microfluidic device. Soft Matter 12 (23), S. 5072 - 5076 (2016)
  43. Zeitschriftenartikel
    Toro-Nahuelpan, M.; Müller, F. D.; Klumpp, S.; Plitzko, J. M.; Bramkamp, M.; Schüler, D.: Segregation of prokaryotic magnetosomes organelles is driven by treadmilling of a dynamic actin-like MamK filament. BMC Biology 14, 14:88 (2016)
  44. Zeitschriftenartikel
    Vach, P. J.; Klumpp, S.; Faivre, D.: Steering magnetic micropropellers along independent trajectories. Journal of Physics D: Applied Physics 49, 065003 (2016)
  45. Zeitschriftenartikel
    Valleriani, A.: A conditional likelihood is required to estimate the selection coefficient in ancient DNA. Scientific Reports 6, 31561 (2016)
  46. Zeitschriftenartikel
    Vila Verde, A.; Frenkel, D.: Kinetics of formation of bile salt micelles from coarse-grained Langevin Dynamics simulations. Soft Matter 12 (23), S. 5172 - 5179 (2016)
  47. Zeitschriftenartikel
    Vila Verde, A.; Santer, M.; Lipowsky, R.: Solvent-shared pairs of densely charged ions induce intense but short-range supra-additive slowdown of water rotation. Physical Chemistry Chemical Physics 18 (3), S. 1918 - 1930 (2016)
  48. Zeitschriftenartikel
    Weikl, T. R.; Hu, J.; Xu, G.-K.; Lipowsky, R.: Binding equilibrium and kinetics of membrane-anchored receptors and ligands in cell adhesion: Insights from computational model systems and theory. Cell Adhesion and Migration 10 (5), S. 576 - 589 (2016)
  49. Zeitschriftenartikel
    Zhao, Z.; Li, Q.; Ji, X.; Dimova, R.; Lipowsky, R.; Liu, Y.: Molar Mass Fractionation in Aqueous Two-Phase Polymer Solutions of Dextran and Poly(ethylene glycol). Journal of Chromatography A 1452, S. 107 - 115 (2016)

Buchkapitel (1)

  1. 2016
    Buchkapitel
    Dimova, R.; Riske, K. A.: Electrodeformation, Electroporation, and Electrofusion of Giant Unilamellar Vesicles. In: Handbook of Electroporation (Hg. Miklavcic, D.). Springer International Publishing, Cham (2016)

Meeting Abstract (4)

  1. 2016
    Meeting Abstract
    Kubsch, B.; Robinson, T.; Lipowsky, R.; Dimova, R.: Presence of Salt and Solution Asymmetry Across Charged Membranes Influences Their Phase State. In Biophysical Journal, 110 (3) Supplement 1 Aufl., 2045-Pos , S. 413a. 60th Annual Meeting of the Biophysical-Society, Los Angeles, CA, 27. Februar 2016 - 02. März 2016. Biophysical Society, Bethesda, MD (2016)
  2. Meeting Abstract
    Rey, U.; Ucar, M.; Lipowsky, R.; Sigrist, S.: Aplip1 Controls the Processivity of Neurexin Axonal Transport. In Biophysical Journal, 110 (3) Supplement 1 Aufl., 2279-Pos , S. 463a. 60th Annual Meeting of the Biophysical-Society, Los Angeles, CA, 27. Februar 2016 - 02. März 2016. Biophysical Society, Bethesda, MD (2016)
  3. Meeting Abstract
    Robinson, T.; Kubsch, B.; Bastiaens, P.; Lipowsky, R.; Dimova, R.: Membrane Fusion via Snare Mimetics Spatially Confined to Intramembrane Domains. In Biophysical Journal (Annual Meeting Abstracts), 110 (3) Supplement 1 Aufl., 1242-Pos, S. 249a - 250a. 60th Annual Meeting of the Biophysical-Society, Los Angeles, CA, 27. Februar 2016 - 02. März 2016. Biophysical Society, Bethesda, MD (2016)
  4. Meeting Abstract
    Steinkühler, J.; Alvey, C.; Lipowsky, R.; Dimova, R.; Discher, D.: Specific Adhesion of Giant Plasma Membrane Vesicles to Surface- Immobilized SIRPα by Membrane Reconstituted ‘‘Marker of Self’’ Signaling Protein CD47. In Biophysical Journal (Annual Meeting Abstracts), 110 (3) Supplement 1 Aufl., 2814-Pos, S. 569a - 570a. 60th Annual Meeting of the Biophysical-Society, Los Angeles, CA, 27. Februar 2016 - 02. März 2016. Biophysical Society, Bethesda, MD (2016)

Poster (1)

  1. 2016
    Poster
    Różycki, .; Lipowsky, R.: Spontaneous curvature of biomembranes from molecular simulations. Biomembrane Days 2016, Berlin (2016)

Hochschulschrift - Doktorarbeit (3)

  1. 2016
    Hochschulschrift - Doktorarbeit
    Agudo-Canalejo, J.: Effects of Bilayer Asymmetry on Nanotube Formation and Particle Engulfment by Biomembranes and Vesicles. Dissertation, 119 S., Technische Universität Berlin, Berlin (2016)
  2. Hochschulschrift - Doktorarbeit
    Sin, C.: Post-transcriptional Control of Gene Expression. Dissertation, 238 S., Universität Potsdam, Potsdam (2016)
  3. Hochschulschrift - Doktorarbeit
    Steinkühler, J.: Partitioning of membrane components in adhering vesicles. Dissertation, Technische Universität, Berlin (2016)
 
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