Publications

Bahrami, A. H.; Raatz, M.; Agudo-Canalejo, J.; Michel, R.; Curtis, E. M.; Hall, C. K.; Gradzielski, M.; Lipowsky, R.; Weikl, T. R.: Wrapping of nanoparticles by membranes. Advances in Colloid and Interface Science 208, pp. 214 - 224 (2014)

Bennet, M.; McCarthy, A.; Fix, D.; Edwards, M. R.; Repp, F.; Vach, P.; Dunlop, J. W. C.; Sitti, M.; Buller, G. S.; Klumpp, S. et al.; Faivre, D.: Influence of magnetic fields on magneto-aerotaxis. PLoS One 9 (7), e101150 (2014)

Dasgupta, R.; Dimova, R.: Inward and outward membrane tubes pulled from giant vesicles. Journal of Physics D: Applied Physics 47 (28), 282001 (2014)

Dimova, R.: Recent developments in the field of bending rigidity measurements on membranes. Advances in Colloid and Interface Science 208, pp. 225 - 234 (2014)

Gomez, D.; Marathe, R.; Bierbaum, V.; Klumpp, S.: Modeling stochastic gene expression in growing cells. Journal of Theoretical Biology 348, pp. 1 - 11 (2014)

Grafmüller, A.; Knecht, V.: The free energy of nanopores in tense membranes. Physical Chemistry Chemical Physics 16 (23), pp. 11270 - 11278 (2014)

Guskova, O. A.; Seidel, C.: Nanoparticle droplets at the polymer brush/solvent interface. Vestnik Tverskovo Gossudarstvenowa Universiteta. Seriya: Khimiyaa (1), pp. 44 - 55 (2014)

Kang, Y.; Barbirz, S.; Lipowsky, R.; Santer, M.: Conformational diversity of O-antigen polysaccharides of the Gram-negative bacterium Shigella flexneri serotype Y. Journal of Physical Chemistry B 118 (9), pp. 2523 - 2534 (2014)

Karpitschka, S.; Hanske, C.; Fery, A.; Riegler, H.: Coalescence and noncoalescence of sessile drops: impact of surface forces. Langmuir 30 (23), pp. 6826 - 6830 (2014)

Karpitschka, S.; Riegler, H.: Sharp transition between coalescence and non-coalescence of sessile drops. Journal of Fluid Mechanics 743, R1 (2014)

Klumpp, S.: The secret life of a cellular business. LaboratoryNews (1), pp. 20 - 21 (2014)

Klumpp, S.; Hwa, T.: Bacterial growth: global effects on gene expression, growth feedback and proteome partition. Current Opinion in Biotechnology 28, pp. 96 - 102 (2014)

Knorr, R. L.; Nakatogawa, H.; Ohsumi, Y.; Lipowsky, R.; Baumgart, T.; Dimova, R.: Membrane morphology is actively transformed by covalent binding of the protein Atg8 to PE-lipids. PLoS One 9 (12), e115357 (2014)

Körnig, A.; Dong, J.; Bennet, M.; Widdrat, M.; Andert, J.; Müller, F. D.; Schüler, D.; Klumpp, S.; Faivre, D.: Probing the mechanical properties of magnetosome chains in living magnetotactic bacteria. Nano Letters 14 (8), pp. 4653 - 4659 (2014)

Krukau, A.; Knecht, V.; Lipowsky, R.: Allosteric control of kinesin's motor domain by tubulin: a molecular dynamics study. Physical Chemistry Chemical Physics 16 (13), pp. 6189 - 6198 (2014)

Lefèvre, C. T.; Bennet, M.; Landau, L.; Vach, P.; Pignol, D.; Bazylinski, D. A.; Frankel, R. B.; Klumpp, S.; Faivre, D.: Diversity of magneto-aerotactic behaviors and oxygen sensing mechanisms in cultured magnetotactic bacteria. Biophysical Journal 107 (2), pp. 527 - 538 (2014)

Li, X.; Kolomeisky, A. B.; Valleriani, A.: Pathway structure determination in complex stochastic networks with non-exponential dwell times. The Journal of Chemical Physics 140 (18), 84102 (2014)

Li, X.; Kolomeisky, A. B.; Valleriani, A.: Stochastic kinetics on networks: when slow is fast. Journal of Physical Chemistry B 118 (35), pp. 10419 - 10425 (2014)

Lipowsky, R.: Remodeling of membrane compartments: some consequences of membrane fluidity. Biological Chemistry 395 (3), pp. 253 - 274 (2014)

Lipowsky, R.: Coupling of bending and stretching deformations in vesicle membranes. Advances in Colloid and Interface Science 208, pp. 14 - 24 (2014)

Lira, R. d.; Dimova, R.; Riske, K. A.: Giant unilamellar vesicles formed by hybrid films of agarose and lipids display altered mechanical properties. Biophysical Journal 107 (7), pp. 1609 - 1619 (2014)

Lutz, B.; Faber, M.; Verma, A.; Klumpp, S.; Schug, A.: Differences between cotranscriptional and free riboswitch folding. Nucleic Acids Research 42 (4), pp. 2687 - 2696 (2014)

Marathe, R.; Meel, C.; Schmidt, N. C.; Dewenter, L.; Kurre, R.; Greune, L.; Schmidt, M. A.; Müller, M. J. I.; Lipowsky, R.; Maier, B. et al.; Klumpp, S.: Bacterial twitching motility is coordinated by a two-dimensional tug-of-war with directional memory. Nature Communications 5, p. 3759 - 3759 (2014)

Mauri, M.; Klumpp, S.: A model for sigma factor competition in bacterial cells. PLoS Computational Biology 10 (10), e1003845 (2014)

Miettinen, M. S.; Monticelli, L.; Nedumpully-Govindan, P.; Knecht, V.; Ignatova, Z.: Stable polyglutamine dimers can contain β-hairpins with interdigitated side chains but not α-helices, β-nanotubes, β-pseudohelices, or steric zippers. Biophysical Journal 106 (8), pp. 1721 - 1728 (2014)

Molcan, M.; Hashim, A.; Kovac, J.; Rajnak, M.; Kopcansky, P.; Makowski, M.; Gojzewski, H.; Molokac, M.; Hvizdak, L.; Timko, M.: Characterization of magnetosomes after exposure to the effect of the sonication and ultracentrifugation. Acta Physica Polonica A 126 (1), pp. 198 - 199 (2014)

Pataraia, S.; Liu, Y.; Lipowsky, R.; Dimova, R.: Effect of cytochrome c on the phase behavior of charged multicomponent lipid membranes. Biochimica et Biophysica Acta 1838 (8), pp. 2036 - 2045 (2014)

Patra, P.; Klumpp, S.: Phenotypically heterogeneous populations in spatially heterogeneous environments. Physical Review E 89 (3), 030702 (2014)

Pobandt, T.; Knecht, V.: Free energy of lipid bilayer defects affected by Alzheimer's disease-associated amyloid-ß₄₂ monomers. The Journal of Physical Chemistry B 118 (13), pp. 3507 - 3516 (2014)

Ponader, D.; Igde, S.; Wehle, M.; Märker, K.; Santer, M.; Bleger, D.; Hartmann, L.: Photoswitchable precision glycooligomers and their lectin binding. Beilstein Journal of Organic Chemistry 10, pp. 1603 - 1612 (2014)

Raatz, M.; Lipowsky, R.; Weikl, T. R.: Cooperative wrapping of nanoparticles by membrane tubes. Soft Matter 10 (20), pp. 3570 - 3577 (2014)

Rudorf, S.; Thommen, M.; Rodnina, M. V.; Lipowsky, R.: Deducing the kinetics of protein synthesis in vivo from the transition rates measured in vitro. PLoS Computational Biology 10 (10), e1003909 (2014)

Sadej, M.; Andrzejewska, E.; Kurc, B.; Gojzewski, H.; Jesionowski, T.: Surface-dependent effect of functional silica fillers on photocuring kinetics of hydrogel materials. Journal of Polymer Science, Part A: Polymer Chemistry 52 (24), pp. 3472 - 3487 (2014)

Santer, M.: New insights into lipid monolayers from coarse-grained simulation techniques. Biophysical Journal 107 (5), pp. 1038 - 1039 (2014)

Scott, M.; Klumpp, S.; Mateescu, E. M.; Hwa, T.: Emergence of robust growth laws from optimal regulation of ribosome synthesis. Molecular Systems Biology 10 (8), 747 (2014)

Stefaniu, C.; Vilotijevic, I.; Santer, M.; Brezesinski, G.; Seeberger, P. H.; Silva, D. V.: Versatility of a glycosylphosphatidylinositol fragment in forming highly ordered polymorphs. Langmuir 30 (18), pp. 5185 - 5192 (2014)

Valleriani, A.; Li, X.; Kolomeisky, A. B.: Unveiling the hidden structure of complex stochastic biochemical networks. The Journal of Chemical Physics 140 (6), 064101 (2014)

Weikl, T. R.; Paul, F.: Conformational selection in protein binding and function. Protein Science 23 (11), pp. 1508 - 1518 (2014)

Yuzenkova, Y.; Gamba, P.; Herber, M.; Attaiech, L.; Shafeeq, S.; Kuipers, O. P.; Klumpp, S.; Zenkin, N.; Veening, J.-W.: Control of transcription elongation by GreA determines rate of gene expression in Streptococcus pneumoniae. Nucleic Acids Research 42 (17), pp. 10987 - 10999 (2014)

Ziobrowski, P.; Andrzejewska, E.; Szybowicz, M.; Nowicka, A.; Sadej-Bajerlein, M.; Gojzewski, H.; Drozdowski, M.: Particle clustering in photocurable nanocomposites: dependence of curing kinetics and viscoelastic properties. Journal of Applied Polymer Science 131 (4), 39895 (2014)

Dimova, R.: Vesicles in Electric Fields. In Biophysical Journal (Annual Meeting Abstracts), 106 (2), pp. 2A - 3A. Biophysical Society, Bethesda, MD (2014)

Kang, Y.; Barbirz, S.; Gohlke, U.; Santer, M.: Molecular dynamics study on the interaction of O-antigen polysaccharides of the gram-negative bacterium Shigella flexneri with the tail-spike-protein of bacteriophage Sf6. In Abstracts of Papers of the American Chemical Society, 248. 248th National Meeting of the American-Chemical-Society (ACS), San Francisco, CA, August 10, 2014 - August 14, 2014. (2014)

Klumpp, S.: Tug-of-War: Mechanical Coordination of Molecular Motors. In Biophysical Journal, 106 (2), p. 10A - 10A. Cell Press, Cambridge, Mass. (2014)

Lira, R. B.; Dimova, R.; Riske, K. A.: Electroporation Dynamics of Giant Vesicles with Encapsulated Gel and in the Presence of Salt or Detergents. In Biophysical Journal, 106 (2), p. 290A - 290A. Cell Press, Cambridge, Mass. (2014)

Lutz, B.; Faber, M.; Verma, A.; Klumpp, S.; Schug, A.: Computational Analysis of Co-Transcriptional Riboswitch Folding. In Biophysical Journal, 106 (2), p. 283A - 283A. Cell Press, Cambridge, Mass. (2014)

Rudorf, S.; Thommen, M.; Rodnina, M. V.; Lipowsky, R.: Protein Synthesis by Ribosomes: Mapping In Vitro onto In Vivo Rates. In Biophysical Journal, 106 (2), 240A. Cell Press, Cambridge, Mass. (2014)

Steinkühler, J.; Lipowsky, R.; Hildebrandt, P.; Dimova, R.: Adhesion-Induced Domain Formation in Multicomponent Membranes. In Biophysical Journal, 106 (2), p. 287A - 287A. Cell Press, Cambridge, Mass. (2014)

Mauri, M.: A model for sigma factor competition in bacterial cells. Dissertation, 167 pp., Universität Potsdam, Potsdam (2014)