Publications

Agudo-Canalejo, J.; Golestanian, R.: Pattern formation by curvature-inducing proteins on spherical membranes. New Journal of Physics 19, 125013 (2017)

Agudo-Canalejo, J.; Lipowsky, R.: Uniform and Janus-like nanoparticles in contact with vesicles: energy landscapes and curvature-induced forces. Soft Matter 13 (11), pp. 2155 - 2173 (2017)

Bhatia, T.; Cornelius, F.; Ipsen, J. H.: Capturing suboptical dynamic structures in lipid bilayer patches formed from free-standing giant unilamellar vesicles. Nature Protocols 12 (8), pp. 1563 - 1575 (2017)

Brilliantov, N. V.; Budkov, Y. A.; Seidel, C.: Theoretical and numerical analysis of nano-actuators based on grafted polyelectrolytes in electric field. Faraday Discussion 199, pp. 487 - 510 (2017)

Broeker, N. K.; Andres, D.; Kang, Y.; Gohlke, U.; Schmidt, A.; Kunstmann, S.; Santer, M.; Barbirz, S.: Complex carbohydrate recognition by proteins: fundamental insights from bacteriophage cell adhesion systems. Perspectives in Science 11, pp. 45 - 52 (2017)

Bühning , M.; Valleriani, A.; Leimkühler, S.: The role of SufS is restricted to Fe−S cluster biosynthesis in Escherichia coli. Biochemistry 56 (14), pp. 1987 - 2000 (2017)

Chen, G.; Pérez-García, R.; Danglad-Flores, J. A.; Riegler, H.: Capillary-enhanced immobilization of nanoparticles. The Journal of Physical Chemistry Letters 8 (24), pp. 6094 - 6098 (2017)

Dimova, R.; Lipowsky, R.: Giant vesicles exposed to aqueous two-phase systems: membrane wetting, budding processes, and spontaneous tubulation. Advanced Materials Interfaces 4 (1), 1600451 (2017)

Ghaisari, S.; Winklhofer, M.; Strauch, P.; Klumpp, S.; Faivre, D.: Magnetosome organization in magnetotactic bacteria unraveled by ferromagnetic resonance spectroscopy. Biophysical Journal 113 (3), pp. 637 - 644 (2017)

Gong, C. C.; Klumpp, S.: Modeling sRNA-regulated plasmid maintenance. PLoS One 12 (1), e0169703 (2017)

Heidari, M.; Satarifard, V.; Tans, S. J.; Ejtehadi, M. R.; Mashaghi, S.; Mashaghi, A.: Topology of internally constrained polymer chains. Physical Chemistry Chemical Physics 19 (28), pp. 18389 - 18393 (2017)

Jehannin, M.; Charton, S.; Corso, B.; Möhwald, H.; Riegler, H.; Zemb, T.: Structured solvent effects on precipitation. Colloid and Polymer Science 295 (10), pp. 1817 - 1826 (2017)

Karpitschka, S.; Liebig, F.; Riegler, H.: Marangoni contraction of evaporating sessile droplets of binary mixtures. Langmuir 33 (19), pp. 4682 - 4687 (2017)

Kashefolgheta, S.; Vila Verde, A.: Developing force fields when experimental data is sparse: AMBER/GAFF-compatible parameters for inorganic and alkyl oxoanions. Physical Chemistry Chemical Physics 19 (31), pp. 20593 - 20607 (2017)

Knorr, R. L.; Mizushima, N.; Dimova, R.: Fusion and scission of membranes: ubiquitous topological transformations in cells. Traffic 18 (11), pp. 758 - 761 (2017)

Kubsch, B.; Robinson, T.; Steinkühler, J.; Dimova, R.: Phase behavior of charged vesicles under symmetric and asymmetric solution conditions monitored with fluorescence microscopy. Journal of Visualized Experiments 128, e56034 (2017)

Meurer, A.; Smith, C. P.; Paprocki, M.; Čertík, O.; Kirpichev, S. B.; Rocklin, M.; Kumar, A.; Ivanov, S.; Moore, J. K.; Singh, S. et al.; Rathnayake, T.; Vig, S.; Granger, B. E.; Muller, R. P.; Bonazzi, F.; Gupta, H.; Vats, S.; Johansson, F.; Pedregosa, F.; Curry, M. J.; Terrel, A. R.; Roučka, Š.; Saboo, A.; Fernando, I.; Kulal, S.; Cimrman, R.; Scopatz, A.: SymPy: symbolic computing in Python. PeerJ Computer Science 3, e103 (2017)

Paul, F.; Wehmeyer, C.; Abualrous, E. T.; Wu, H.; Crabtree, M. D.; Schöneberg, J.; Clarke, J.; Freund, C.; Weikl, T. R.; Noé, F.: Protein-peptide association kinetics beyond the seconds timescale from atomistic simulations. Nature Communications 8, 1095 (2017)

Pérez-García, R.; Riegler, H.: Controlled self-organized positioning of small aggregates by patterns of (sub)nanosized active sites. Crystal Growth & Design 17 (4), pp. 1870 - 1875 (2017)

Raatz, M.; Weikl, T. R.: Membrane tubulation by elongated and patchy nanoparticles. Advanced Materials Interfaces 4 (1), 1600325 (2017)

Reddy-Alla, S.; Böhme, M. A.; Reynolds, E.; Beis, C.; Grasskamp, A. T.; Mampell, M. M.; Maglione, M.; Jusyte, M.; Rey, U.; Babikir, H. et al.; McCarthy, A. W.; Quentin, C.; Matkovic, T.; Bergeron, D. D.; Mushtaq, Z.; Göttfert, F.; Owald, D.; Mielke, T.; Hell, S. W.; Sigrist, S. J.; Walter, A. M.: Stable positioning of Unc13 restricts synaptic vesicle fusion to defined release sites to promote synchronous neurotransmission. Neuron 95 (6), pp. 1350 - 1364.e12 (2017)

Robalo, J. R.; Huhmann, S.; Koksch, B.; Verde, A. V.: The multiple origins of the hydrophobicity of fluorinated apolar amino acids. Chem 3 (5), pp. 881 - 897 (2017)

Satarifard, V.; Heidari, M.; Mashaghi, S.; Tans, S. J.; Ejtehadi, M. R.; Mashaghi, A.: Topology of polymer chains under nanoscale confinement. Nanoscale 9 (33), pp. 12170 - 12177 (2017)

Satarifard, V.; Kashefolgheta, S.; Verde, A. V.; Grafmüller, A.: Is the solution activity derivative sufficient to parametrize ion–ion interactions? Ions for tip5p water. Journal of Chemical Theory and Computation 13 (5), pp. 2112 - 2122 (2017)

Sauter, J.; Grafmüller, A.: Procedure for transferable coarse-grained models of aqueous polysaccarides. Journal of Chemical Theory and Computation 13 (1), pp. 223 - 236 (2017)

Singh, G.; Verma, R.; Wagle, S.; Gadre, S. R.: Explicit hydration of ammonium ion by correlated methods employing molecular tailoring approach. Molecular Physics 115 (21-22), pp. 2708 - 2720 (2017)

Soulié, V.; Lequien, F.; Ferreira-Gomes, F.; Moine, G.; Feron, D.; Prene, P.; Möhwald, H.; Zemb, T.; Riegler, H.: Salt-induced iron corrosion under evaporating sessile droplets of aqueous sodium chloride solutions. Materials and Corrosion - Werkstoffe und Korrosion 68 (9), pp. 927 - 934 (2017)

Stange, M.; Hintsche, M.; Sachse, K.; Gerhardt, M.; Valleriani, A.; Beta, C.: Analyzing the spatial positioning of nuclei in polynuclear giant cells. Journal of Physics D: Applied Physics 50 (46), 464001 (2017)

Sun, B.; Li, Q.; Riegler, H.; Eickelmann, S.; Dai, L.; Yang, Y.; Pérez-García, R.; Jia, Y.; Chen, G.; Fei, J. et al.; Holmberg, K.; Li, J.: Self-assembly of ultralong aligned dipeptide single crystals. ACS Nano 11 (10), pp. 10489 - 10494 (2017)

Sun, J.; Xu, J.; Grafmüller, A.; Huang, X.; Liedel, C.; Algara-Siller, G.; Willinger, M.; Yang, C.; Fu, Y.; Wang, X. et al.; Shalom, M.: Self-assembled carbon nitride for photocatalytic hydrogen evolution and degradation of p-nitrophenol. Applied Catalysis B: Environmental 205, pp. 1 - 10 (2017)

Tsereteli, L.; Grafmüller, A.: An accurate coarse-grained model for chitosan polysaccharides in aqueous solution. PLoS One 12 (7), e0180938 (2017)

Uçar, M. C.; Lipowsky, R.: Tug-of-war between two elastically coupled molecular motors: a case study on force generation and force balance. Soft Matter 13 (2), pp. 328 - 344 (2017)

Wijekoon, C. J. K.; Udagedara, S. R.; Knorr, R. L.; Dimova, R.; Wedd, A. G.; Xiao, Z.: Copper ATPase CopA from Escherichia coli: quantitative correlation between ATPase activity and vectorial copper transport. Journal of the American Chemical Society 139 (12), pp. 4266 - 4269 (2017)

Casadei, B. R.; Caritá, A. C.; Dutra, V. F.; de Paula, E.; Dimova, R.; Figueiredo, M. S.; Riske, K. A.: Mechanical Properties of Model Erythrocytes Membranes from Healthy and Hereditary Spherocytosis Subjects. In Biophysical Journal, 112 (3) Supplement 1 Ed., p. 383a. Cell Press, Cambridge, Mass. (2017)

Dimova, R.; Bhatia, T.; Dasgupta, R.; Fricke, N.; Agudo-Canalejo, J.; Lipowsky, R.: GM1 Softens the Membrane, Induces Domains and Causes Spontaneous Tubulation in Giant Vesicles. In Biophysical Journal, 112 (3), p. 42a. Cell Press, Cambridge, Mass. (2017)

Kashef Ol Gheta, S.; Vila Verde, A.: Excess sodium dramatically alters binding preference between oxoanions and cationic amino acids. In European Biophysics Journal with Biophysics Letters, 46 (Suppl. 1), P-402, p. S219 - S219. 19th IUPAB Congress / 11th EBSA Congress Location: British Biophys Soc, Edinburgh, Scotland, July 16, 2017 - July 20, 2017. Springer, Berlin (2017)

Klumpp, S.; Lefevre, C.; Landau, L.; Codutti, A.; Bennet, M.; Faivre, D.: Magneto-Aerotaxis: Bacterial Motility in Magnetic Fields. In Biophysical Journal, 112 (3) Supplement 1 Ed., p. 567a. Cell Press, Cambridge, Mass. (2017)

Kubsch, B.; Robinson, T.; Kliesch, T.-T.; Janshoff, A.; Lipowsky, R.; Dimova, R.: Phase Specific Membrane Fusion with SNARE Mimetics. In Biophysical Journal, 112 (3) 3 Ed., p. 77a. Cell Press, Cambridge, Mass. (2017)

Lira, R. B.; Dimova, R.; Riske, K. A.: Stability of Charged Membranes: The Role of Pore Edge Tension. In Biophysical Journal, 112 (3) Supplement 1 Ed., p. 174a. Cell Press, Cambridge, Mass. (2017)

Lira, R. d.; Robinson, T.; Dimova, R.; Riske, K. A.: Charge-dependent membrane fusion in a pure lipid system. In European Biophysics Journal with Biophysics Letters, 46 (Suppl. 1), P-32, p. S123 - S123. 19th IUPAB Congress / 11th EBSA Congress Location: British Biophys Soc, Edinburgh, Scotland, July 16, 2017 - July 20, 2017. Springer, Berlin (2017)

Luo, C.; Blank, K. G.; Lipowsky, R.; Vila Verde, A.: Mechanism of coiled-coil deformation under tension strongly depends on the pull speed. In European Biophysics Journal with Biophysics Letters, 46 (Suppl. 1), P-416, p. S222 - S222. 19th IUPAB Congress / 11th EBSA Congress Location: British Biophys Soc, Edinburgh, Scotland, July 16, 2017 - July 20, 2017. Springer, Berlin (2017)

Rao, L.; Berger, F.; Nicholas, M. P.; Gennerich, A.: Dynein's Direction-Dependent Microtubule-Binding Strength is Controlled via a Tension-Induced Sliding of Dynein's Stalk Helices Mediated by the Coiled-Coil Strut. In Biophysical Journal, 112 (3) Supplement 1 Ed., p. 5a. Cell Press, Cambridge, Mass. (2017)

Robalo, J. R.; Huhmann, S.; Koksch, B.; Vila Verde, A.: The multiple origins of the hydrophobicity of fluorinated apolar amino acids. In European Biophysics Journal with Biophysics Letters, 46 (Suppl. 1), P-628, p. S278 - S278. 19th IUPAB Congress / 11th EBSA Congress Location: British Biophys Soc, Edinburgh, Scotland, July 16, 2017 - July 20, 2017. Springer, Berlin (2017)

Steinkühler, J.; Bhatia, T.; Lipowsky, R.; Dimova, R.: Mechanical Properties of Giant Plasma Membrane Vesicles. In Biophysical Journal, 112 (3) Supplement 1 Ed., p. 222a. Cell Press, Cambridge, Mass. (2017)

Georgiev, V.: Light-induced transformations in biomembranes. Dissertation, 81 pp., Universität Potsdam, Potsdam (2017)

Kashef Ol Gheta, S.: Developing ion parameters and investigating ion specific effects in biological systems. Dissertation, 93 pp., Freie Universität Berlin, Berlin (2017)

Kiani, B.: On structural properties of magnetosome chains. Dissertation, 117 pp., Universität Potsdam, Potsdam (2017)

Kunstmann, S.: Design of a high-affinity carbohydrate binding protein. Dissertation, XI, 169 pp., Universität Potsdam, Potsdam (2017)

Muždalo, A.: Thermal cis→trans isomerization of azobenzenes studied by path sampling and QM/MM stochastic dynamics. Dissertation, 144 pp., Universität Potsdam, Potsdam (2017)

Paul, F.: Markov state modeling of binding and conformational changes of proteins. Dissertation, 112 pp., Universität Potsdam, Potsdam (2017)

Sauter, J.: The molecular origin of plant cell wall swelling. Dissertation, 127 pp., Universität Potsdam, Potsdam (2017)

Uçar, M. C.: Elastic interactions between antagonistic molecular motors. Dissertation, 106 pp., Universität Potsdam, Potsdam (2017)

Wiechecki, K.; Manohar, S.; Silva, G.; Tchourine, K.; Jacob, S.; Valleriani, A.; Vogel, C.: Integrative meta-analysis reveals that most yeast proteins are very stable. bioRxiv (2017)