Publications

Journal Article

Banerjee, P.; Lipowsky, R.; Santer, M.: Coarse-grained molecular model for the glycosylphosphatidylinositol anchor with and without protein. Journal of Chemical Theory and Computation 16 (6), pp. 3889 - 3903 (2020)

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Journal Article

Bente, K.; Mohammadinejad, S.; Charsooghi, M.; Bachmann, F.; Codutti, A.; Lefèvre, C. T.; Klumpp, S.; Faivre, D.: High-speed motility originates from cooperatively pushing and pulling flagella bundles in bilophotrichous bacteria. eLife 9, e47551 (2020)

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External

Journal Article

Bergues Pupo, A. E.; Lipowsky, R.; Vila Verde, A.: Unfolding mechanism and free energy landscape of single, stable, alpha helices at low pull speeds. Soft Matter 16 (43), pp. 9917 - 9928 (2020)

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Journal Article

Bhatia, T.; Christ, S.; Steinkühler, J.; Dimova, R.; Lipowsky, R.: Simple sugars shape giant vesicles into multispheres with many membrane necks. Soft Matter 16 (5), pp. 1246 - 1258 (2020)

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Journal Article

Bhatia, T.; Robinson, T.; Dimova, R.: Membrane permeability to water measured by microﬂuidic trapping of giant vesicles. Soft Matter 16 (31), pp. 7359 - 7369 (2020)

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Journal Article

Chen, N.; Zhao, Z.; Wang, Y.; Dimova, R.: Resolving the mechanisms of soy glycinin self-coacervation and hollow-condensate formation. ACS Macro Letters 9 (12), pp. 1844 - 1852 (2020)

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Journal Article

Faizi, H. A.; Reeves, C. J.; Georgiev, V.; Vlahovska, P. M.; Dimova, R.: Fluctuation spectroscopy of giant unilamellar vesicles using confocal and phase contrast microscopy. Soft Matter 16 (39), pp. 8996 - 9001 (2020)

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External

Journal Article

Fonda, P.; Al-Izzi, S. C.; Giomi, L.; Turner, M.: Measuring Gaussian rigidity using curved substrates. Physical Review Letters 125 (18), 188002 (2020)

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Journal Article

Fujioka, Y.; Alam, J. M.; Noshiro, D.; Mouri, K.; Ando, T.; Okada, Y.; May, A. I.; Knorr, R. L.; Suzuki, K.; Ohsumi, Y. et al.; Noda, N. N.: Phase separation organizes the site of autophagosome formation. Nature 578 (7794), pp. 301 - 305 (2020)

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Journal Article

Gojzewski, H.; Ghani, F.; Szybowicz, M.: Thin films of copper phthalocyanine deposited by solution processing methods. Materials Science-Poland 38 (1), pp. 79 - 90 (2020)

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Journal Article

Kav, B.; Grafmüller, A.; Schneck, E.; Weikl, T. R.: Weak carbohydrate-carbohydrate interactions in membrane adhesion are fuzzy and generic. Nanoscale 12 (33), pp. 17342 - 17353 (2020)

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Journal Article

Knox-Brown, P.; Rindfleisch, T.; Günther, A.; Balow, K.; Bremer, A.; Walther, D.; Miettinen, M. S.; Hincha, D. K.; Thalhammer, A.: Similar yet different–structural and functional diversity among Arabidopsis thaliana LEA_4 proteins. International Journal of Molecular Sciences 21 (8), 2794 (2020)

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Journal Article

Kunstmann, S.; Engström, O.; Wehle, M.; Widmalm, G.; Santer, M.; Babirz, S.: Increasing the affinity of an O-antigen polysaccharide binding site in Shigella flexneri bacteriophage Sf6 tailspike protein. Chemistry – A European Journal 26 (32), pp. 7263 - 7273 (2020)

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Journal Article

Lira, R. d.; Willersinn, J.; Schmidt, B. V. K. J.; Dimova, R.: Selective partitioning of (biomacro)molecules in the crowded environment of double-hydrophilic block copolymers. Macromolecules 53 (22), pp. 10179 - 10188 (2020)

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Journal Article

Love, C.; Steinkühler, J.; Gonzales, D. T.; Yandrapalli, N.; Robinson, T.; Dimova, R.; Tang, T.-Y. D.: Reversible pH-responsive coacervate formation in lipid vesicles activates dormant enzymatic reactions. Angewandte Chemie, International Edition 59 (15), pp. 5950 - 5957 (2020)

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Journal Article

Marušič, N.; Otrin, L.; Zhao, Z.; Lira, R. d.; Kyrilis, F. L.; Hamdi, F.; Kastritis, P. L.; Vidaković-Koch, T.; Ivanova, I.; Sundmacher, K. et al.; Dimova, R.: Constructing artificial respiratory chain in polymer compartments: insights into the interplay between bo₃ oxidase and the membrane. Proceedings of the National Academy of Sciences of the United States of America 117 (26), pp. 15006 - 15017 (2020)

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Journal Article

Paris, G.; Klinkusch, A.; Heidepriem, J.; Tsouka, A.; Zhang, J.; Mende, M.; Mattes, D.; Mager, D.; Riegler, H.; Eickelmann, S. et al.; Löffler, F. F.: Laser-induced forward transfer of soft material nanolayers with millisecond pulses shows contact-based material deposition. Applied Surface Science 508, 144973 (2020)

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Journal Article

Plucinski , A.; Willersinn, J.; Lira, R. d.; Dimova, R.; Schmidt, B. V. K. J.: Aggregation and crosslinking of poly(N,N-dimethylacrylamide)-b-pullulan double hydrophilic block copolymers. Macromolecular Chemistry and Physics 221 (13), 2000053 (2020)

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Journal Article

Robalo, J. R.; Mendes de Oliveira, D.; Imhof, P.; Ben-Amotz, D.; Vila Verde, A.: Quantifying how step-wise fluorination tunes local solute hydrophobicity, hydration shell thermodynamics and the quantum mechanical contributions of solute–water interactions. Physical Chemistry Chemical Physics 22 (40), pp. 22997 - 23008 (2020)

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Journal Article

Roy, D.; Steinkühler, J.; Zhao, Z.; Lipowsky, R.; Dimova, R.: Mechanical tension of biomembranes can be measured by super resolution (STED) microscopy of force-induced nanotubes. Nano Letters 20 (5), pp. 3185 - 3191 (2020)

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Journal Article

Sakai, Y.; Koyama-Honda, I.; Tachikawa, M.; Knorr, R. L.; Mizushima, N.: Modeling membrane morphological change during autophagosome formation. iScience 23 (9), 101466 (2020)

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Journal Article

Schullian, O.; Woodard, J.; Tirandaz, A.; Mashaghi, A.: A circuit topology approach to categorizing changes in biomolecular structure. Frontiers in Physics 8, 5 (2020)

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Journal Article

Sebastiani, F.; Vila Verde, A.; Heyden, M.; Schwaab, G.; Havenith, M.: Cooperativity and ion pairing in magnesium sulfate aqueous solutions from the dilute regime to the solubility limit. Physical Chemistry Chemical Physics 22 (21), pp. 12140 - 12153 (2020)

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Journal Article

Sessa, L.; Concilio, S.; Walde, P.; Robinson, T.; Dittrich, P. S.; Porta, A.; Panunzi, B.; Caruso, U.; Piotto, S.: Study of the interaction of a novel semi-synthetic peptide with model lipid membranes. Membranes 10 (10), 294 (2020)

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Journal Article

Siciliano, G.; Costa, G.; Suárez-Cortés, P.; Valleriani, A.; Alano, P.; Levashina, E. A.: Critical steps of Plasmodium falciparum ookinete maturation. Frontiers in Microbiology 11, 269 (2020)

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supplementary-material

Journal Article

Silva Seco, B. M.; Xu, F.-F.; Grafmüller, A.; Kottari, N.; Pereira, C. L.; Seeberger, P. H.: Sequential linkage of carbohydrate antigens to mimic capsular polysaccharides: towards semisynthetic glycoconjugate vaccine candidates against Streptococcus pneumoniae serotype 14. ACS Chemical Biology 15 (9), pp. 2395 - 2405 (2020)

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Journal Article

Singhal, A.; Schneible, J. D.; Lilova, R. L.; Hall, C. K.; Menegatti, S.; Grafmüller, A.: A multiscale coarse-grained model to predict the molecular architecture and drug transport properties of modified chitosan hydrogels. Soft Matter 16 (47), pp. 10591 - 10610 (2020)

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Journal Article

Sletten, E. T.; Danglad-Flores, J. A.; Nuño, M.; Guthrie, D.; Seeberger, P. H.: Automated glycan assembly in a variable-bed flow reactor provides insights into oligosaccharide–resin interactions. Organic Letters 22 (11), pp. 4213 - 4216 (2020)

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Journal Article

Steinkühler, J.; Knorr, R. L.; Zhao, Z.; Bhatia, T.; Bartelt, S. M.; Wegner, S.; Dimova, R.; Lipowsky, R.: Controlled division of cell-sized vesicles by low densities of membrane-bound proteins. Nature Communications 11, 905 (2020)

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Journal Article

Thai, E.; Costa, G.; Weyrich, A.; Murugan, R.; Oyen, D.; Prieto, K.; Bosch, A.; Valleriani, A.; Wu, N. C.; Pholcharee, T. et al.; Scally, S. W.; Wilson, I. A.; Wardemann, H.; Julien, J.-P.; Levashina, E. A.: A high-affinity antibody against the CSP N-terminal domain lacks Plasmodium falciparum inhibitory activity. Journal of Experimental Medicine 217 (11), e20200061 (2020)

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Journal Article

Trösemeier, J.-H.; Rudorf, S.; Lößner, H.; Hofner, B.; Kamp, C.: Modellentwicklung und maschinelles Lernen erhöhen die Proteinausbeute. Biospektrum 26 (3), pp. 262 - 264 (2020)

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Journal Article

Uçar, M. C.; Lipowsky, R.: Collective force generation by molecular motors is determined by strain-induced unbinding. Nano Letters 20 (1), pp. 669 - 676 (2020)

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Journal Article

Vietri, M.; Schultz, S. W.; Bellanger, A.; Jones, C. M.; Petersen, L. I.; Raiborg, C.; Skarpen, E.; Pedurupillay, C. R. J.; Kjos, I.; Kip, E. et al.; Timmer, R.; Jain, A.; Collas, P.; Knorr, R. L.; Grellscheid, S. N.; Kusumaatmaja, H.; Brech, A.; Micci, F.; Stenmark, H.; Campsteijn, C.: Unrestrained ESCRT-III drives micronuclear catastrophe and chromosome fragmentation. Nature Cell Biology (2020)

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Journal Article

Vonshak, O.; Divon, Y.; Förste, S.; Garenne, D.; Noireaux, V.; Lipowsky, R.; Rudorf, S.; Daube, S. S.; Bar-Ziv, R. H.: Programming multi-protein assembly by gene-brush patterns and two-dimensional compartment geometry. Nature Nanotechnology 15 (9), pp. 783 - 791 (2020)

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Journal Article

Weikl, T. R.; Hemmateenejad, B.: Accessory mutations balance the marginal stability of the HIV-1 protease in drug resistance. Proteins: Structure, Function, and Bioinformatics 88 (3), pp. 476 - 484 (2020)

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Journal Article

Witt, H.; Yandrapalli, N.; Sari, M.; Turco, L.; Robinson, T.; Steinem, C.: Precipitation of calcium carbonate inside giant unilamellar vesicles composed of fluid-phase lipids. Langmuir 36 (44), pp. 13244 - 13250 (2020)

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Journal Article

Yandrapalli, N.; Robinson, T.; Antonietti, M.; Kumru, B.: Graphitic carbon nitride stabilizers meet microfluidics: from stable emulsions to photoinduced synthesis of hollow polymer spheres. Small 16 (32), 2001180 (2020)

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Journal Article

Yandrapalli, N.; Seemann, T.; Robinson, T.: On-chip inverted emulsion method for fast giant vesicle production, handling, and analysis. Micromachines 11 (3), 285 (2020)

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Journal Article

Yuan, J.; Antila, H.; Luijten, E.: Structure of polyelectrolyte brushes on polarizable substrates. Macromolecules 53 (8), pp. 2983 - 2990 (2020)

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Journal Article

Zhu, Y.; Tyrikos-Ergas, T.; Schiefelbein, K.; Grafmüller, A.; Seeberger, P. H.; Delbianco, M.: Automated access to well-defined ionic oligosaccharides. Organic & Biomolecular Chemistry 18 (7), pp. 1349 - 1353 (2020)

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Conference Paper (1)

2020

Conference Paper

Favard, C.; Chojnacki, J.; Yandrapalli, N.; Mak, J.; Eggeling, C.; Muriaux, D.: Specific lipid recruitment by the retroviral gag protein upon HIV-1 assembly: from model membranes to infected cells. Viruses 2020—Novel Concepts in Virology, Barcelona, Spain, February 05, 2020 - May 07, 2020. Proceedings 50 (1), 102, (2020)

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Meeting Abstract (3)

2020

Meeting Abstract

Antila, H.; Miettinen, M. S.: Data-driven development of lipid force fields for molecular dynamics simulations. In Biophysical Journal, 118 (3, Supplement 1), pp. 141a - 142a. Cell Press, Cambridge, Mass. (2020)

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Meeting Abstract

Miettinen, M. S.; Lipowsky, R.: Spontaneous curvature generation in asymmetric lipid bilayers with tensionless leaflets. In Biophysical Journal, 118 (3, Supplement 1). Cell Press, Cambridge, Mass. (2020)

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Meeting Abstract

Schullian, O.; Lipowsky, R.; Miettinen, M. S.: Formally correct solutions to local stress equation can be non-physical. In Biophysical Journal, 118 (3, Supplement 1), p. 89a. Cell Press, Cambridge, Mass. (2020)

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Thesis - PhD (3)

2020

Thesis - PhD

Christ, S.: Morphological transitions of vesicles exposed to nonuniform spatio-temporal conditions. Dissertation, viii, 105 pp., Universität, Potsdam (2020)

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Thesis - PhD

Irmscher, T.: Enzymatic remodelling of the exopolysaccharide stewartan network. Dissertation, xiv, 170 pp., Universität, Potsdam (2020)

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Thesis - PhD

Singhal, A.: A multi-scale toolbox to predict structure and function of polysaccharides aggregates. Dissertation, 118 pp., Technische Universität Berlin, Berlin (2020)

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Working Paper (3)

2020

Working Paper

Antila, H.; Wurl, A.; Ollila, O. H. S.; Miettinen, M. S.; Ferreira, T. M.: Quasi-uncoupled rotational diffusion of phospholipid headgroups from the main molecular frame. arxiv Condensed Matter: Materials Science, 2009.06774 (2020)

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Working Paper

García-Aguilar, I.; Fonda, P.; Giomi, L.: Dislocation screening in crystals with spherical topology. arXiv, 02446 (2020)

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Working Paper

Valleriani, A.; Chiarugi, D.: A workbench for the translational control of gene expression. bioRxiv (2020)

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