Zeitschriftenartikel (965)

2013
Zeitschriftenartikel
Sosale, N.; Rouhi, T.; Lipowsky, R.; Discher, D. E.: 'Marker of self', CD47, modulates mechanical forces imposed by macrophages during phagocytosis. Biophysical Journal 104 (2 Suppl. 1), S. 480A - 480A (2013)
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Suraniti, E.; Kanoufi, F.; Gosse, C.; Zhao, X.; Dimova, R.; Pouligny, B.; Sojic, N.: Electrochemical Detection of Single Microbeads Manipulated by Optical Tweezers in the Vicinity of Ultramicroelectrodes. Analytical Chemistry 85 (19), S. 8902 - 8909 (2013)
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Tong, Y.; Vila Verde, A.; Campen, K.: The Free OD at the Air/D2O Interface is Structurally and Dynamically Heterogeneous. The Journal of Physical Chemistry B 117 (39), S. 11753 - 11764 (2013)
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Vach, P. J.; Brun, N.; Bennet, M.; Bertinetti, L.; Widdrat, M.; Baumgartner, J.; Klumpp, S.; Fratzl, P.; Faivre, D.: Selecting for function: solution synthesis of magnetic nanopropellers. Nano Letters 13 (11), S. 5373 - 5378 (2013)
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Vila Verde, A.; Lipowsky, R.: Cooperative slowdown of water rotation near densely charged ions is intense but short-ranged. The Journal of Physical Chemistry B 117, S. 10556 - 10566 (2013)
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Weikl, T. R.; Hemmateenejad, B.: How conformational changes can affect catalysis, inhibition and drug resistance of enzymes with induced-fit binding mechanism such as the HIV-1 protease. Biochimica et Biophysica Acta: Proteins and Proteomics 1834 (5), S. 867 - 873 (2013)
2012
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Bahrami, A. H.; Lipowsky, R.; Weikl, T. R.: Tubulation and aggregation of spherical nanoparticles adsorbed on vesicles. Physical Review Letters 109 (18), 188102 (2012)
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Brilliantov, N. V.; Seidel, C.: Grafted polyelectrolyte in strong electric field under load: field-regulated force and chain contraction. EPL 97 (2), 28006 (2012)
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Casse, O.; Shkilnyy, A.; Linders, J.; Mayer, C.; Haussinger, D.; Völkel, A.; Thünemann, A. F.; Dimova, R.; Cölfen, H.; Meier, W. et al.; Schlaad, H.; Taubert, A.: Solution behavior of double-hydrophilic block copolymers in dilute aqueous solution. Macromolecules 45 (11), S. 4772 - 4777 (2012)
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Deneke, C.; Rudorf, S.; Valleriani, A.: Transient Phenomena in Gene Expression after Induction of Transcription. PLoS One 7 (4), e35044 (2012)
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Dimova, R.: Giant vesicles: a biomimetic tool for membrane characterization. Advances in Planar Lipid Bilayers and Liposomes 16, S. 1 - 50 (2012)
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Dimova, R.; Lipowsky, R.: Lipid membranes in contact with aqueous phases of polymer solutions. Soft Matter 8 (24), S. 2409 - 2415 (2012)
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Dong, J. J.; Klumpp, S.; Zia, R. K. P.: Entrainment and unit velocity: surprises in an accelerated exclusion process. Physical Review Letters 109 (13), 130602 (2012)
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Fedyunin, I.; Lehnhardt, L.; Böhmer, N.; Kaufmann, P.; Zhang, G.; Ignatova, Z.: tRNA concentration fine tunes protein solubility. FEBS Letters 586 (19), S. 3336 - 3340 (2012)
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Garz, A.; Sandmann, M.; Rading, M.; Ramm, S.; Menzel, R.; Steup, M.: Cell-to-cell diversity in a synchronized Chlamydomonas culture as revealed by single-cell analyses. Biophysical Journal 103 (5), S. 1078 - 1086 (2012)
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Guskova, O. A.; Seidel, C.: Assembly of nano-particles on diblock copolymer brushes: toward laterally nano-structured composites. Soft Matter 8 (10), S. 2833 - 2843 (2012)
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Hausmann, R.; Grepl, M.; Knecht, V.; Moeller, M. J.: The glomerular filtration barrier function: new concepts. Current Opinion in Nephrology and Hypertension 21 (4), S. 441 - 449 (2012)
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Kar, P.; Knecht, V.: Energetics of mutation-induced changes in potency of lersivirine against HIV-1 reverse transcriptase. Journal of Physical Chemistry B 116 (22), S. 6269 - 6278 (2012)
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Kar, P.; Knecht, V.: Mutation-induced loop opening and energetics for binding of tamiflu to influenza N8 neuraminidase. Journal of Physical Chemistry B 116 (21), S. 6137 - 6149 (2012)
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Kar, P.; Knecht, V.: Origin of decrease in potency of darunavir and two related antiviral inhibitors against HIV-2 compared to HIV-1 protease. Journal of Physical Chemistry B 116 (8), S. 2605 - 2614 (2012)
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Kar, P.; Knecht, V.: Energetic basis for drug resistance of HIV-1 protease mutants against amprenavir. Journal of Computer-Aided Molecular Design 26 (2), S. 215 - 232 (2012)
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Keller, P.; Valleriani, A.: Single-molecule stochastic times in a reversible bimolecular reaction. The Journal of Chemical Physics 137 (8), 084106 (2012)
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Klumpp, S.: Mechanisms and economy of molecular machines. Physica Scripta T151, 014066 (2012)
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Klumpp, S.; Dong, J. J.; Hwa, T.: On ribosome load, codon usage and protein abundance. PLoS One 7, e48542 (2012)
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Klumpp, S.; Faivre, D.: Interplay of magnetic interactions and active movements in the formation of magnetosome chains. PLoS One 7 (3), e33562 (2012)
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Knorr, R. L.; Dimova, R.; Lipowsky, R.: Curvature of double-membrane organelles generated by changes in membrane size and composition. PLoS One 7 (3), e32753 (2012)
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Kusumaatmaja, H.; Lipowsky, R.; Jin, C.; Mutihac, R. C.; Riegler, H.: Nonisomorphic nucleation pathways arising from morphological transitions of liquid channels. Physical Review Letters 108 (12), 126102 (2012)
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Lechner, S.; Patra, P.; Klumpp, S.; Bertram, R.: Interplay between population dynamics and drug tolerance in Staphylococcus aureus persister cells. Journal of Molecular Microbiology and Biotechnology 22, S. 381 - 391 (2012)
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Li, X.; Lipowsky, R.; Kierfeld, J.: Critical motor number for fractional steps of cytoskeletal filaments in gliding assays. PLoS One 7 (8), e43219 (2012)
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Li, Y. H.; Kusumaatmaja, H.; Lipowsky, R.; Dimova, R.: Wetting-induced budding of vesicles in contact with several aqueous phases. The Journal of Physical Chemistry B 116 (6), S. 1819 - 1823 (2012)
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Liu, Y.; Lipowsky, R.; Dimova, R.: Concentration dependence of the interfacial tension for aqueous two-phase polymer solutions of dextran and polyethylene glycol. Langmuir 28 (8), S. 3831 - 3839 (2012)
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Marathe, R.; Bierbaum, V.; Gomez, D.; Klumpp, S.: Deterministic and stochastic descriptions of gene expression dynamics. Journal of Statistical Physics 148 (4), S. 607 - 626 (2012)
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Marathe, R.; Gomez, D.; Klumpp, S.: Sources of stochasticity in constitutive and autoregulated gene expression. Physica Scripta T151, 014068 (2012)
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Miettinen, M. S.; Knecht, V.; Monticelli, L.; Ignatova, Z.: Assessing polyglutamine conformation in the nucleating event by molecular dynamics simulations. The Journal of Physical Chemistry B 116 (34), S. 10259 - 10265 (2012)
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Niedermayer, T.; Jégou, A.; Chieze, L.; Guichard, B.; Helfer, E.; Romet-Lemonne, G.; Carlier, M. F.; Lipowsky, R.: Intermittent depolymerization of actin filaments is caused by photo-induced dimerization of actin protomers. Proceedings of the National Academy of Sciences of the United States of America 109 (27), S. 10769 - 10774 (2012)
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Rózycki, B.; Boura, E.; Hurley, J. H.; Hummer, G.: Membrane-elasticity model of coatless vesicle budding induced by ESCRT complexes. PLoS Computational Biology 8 (10), e1002736 (2012)
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Rudorf, S.; Rädler, J. O.: Self-assembly of stable monomolecular nucleic acid lipid particles with a size of 30 nm. Journal of the American Chemical Society 134 (28), S. 11652 - 11658 (2012)
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Rusconi, M.; Valleriani, A.; Dunlop, J. W. C.; Kurths, J.; Weinkamer, R.: Quantitative approach to the stochastics of bone remodeling. EPL 97 (2), 28009 (2012)
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Salipante, P. F.; Knorr, R. L.; Dimova, R.; Vlahovska, P. M.: Electrodeformation method for measuring the capacitance of bilayer membranes. Soft Matter 8 (14), S. 3810 - 3816 (2012)
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Stefaniu, C.; Vilotijevic, I.; Santer, M.; Varón Silva, D.; Brezesinski, G.; Seeberger, P. H.: Subgel phase structure in monolayers of glycosylphosphatidylinositol glycolipids. Angewandte Chemie International Edition 51, S. 12874 - 12878 (2012)
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Stieger, T.; Schoen, M.; Weikl, T. R.: Adhesion of surfaces mediated by adsorbed particles: Monte Carlo simulations and a general relationship between adsorption isotherms and effective adhesion energies. Soft Matter 8, S. 11737 - 11745 (2012)
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Verde, A. V.; Bolhuis, P. G.; Campen, R. K.: Statics and dynamics of free and hydrogen-bonded OH groups at the air/water interface. The Journal of Physical Chemistry B 116 (31), S. 9467 - 9481 (2012)
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von Deuster, C. I. E.; Knecht, V.: Antimicrobial selectivity based on zwitterionic lipids and underlying balance of interactions. Biochimica et Biophysica Acta: BBA 1818 (9), S. 2192 - 2201 (2012)
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Wehle, M.; Vilotijevic, I.; Lipowsky, R.; Seeberger, P. H.; Varón Silva, D.; Santer, M.: Mechanical compressibility of the glycosylphosphatidylinositol (GPI) anchor backbone governed by independent glycosidic linkages. Journal of the American Chemical Society 134 (46), S. 18964 - 18972 (2012)
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Weikl, T. R.; Boehr, D. D.: Conformational selection and induced changes along the catalytic cycle of Escherichia coli dihydrofolate reductase. Proteins: Structure, Function, and Bioinformatics 80 (10), S. 2369 - 2383 (2012)
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Zhang, G.; Fedyunin, I.; Kirchner, S.; Xiao, C. L.; Valleriani, A.; Ignatova, Z.: FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads. Nucleic Acids Research (London) 40 (11), e83 (2012)
2011
Zeitschriftenartikel
Berger, F.; Keller, C.; Müller, M. J. I.; Klumpp, S.; Lipowsky, R.: Co-operative transport by molecular motors. Biochemical Society Transactions 39 (5), S. 1211 - 1215 (2011)
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Bierbaum, V.; Lipowsky, R.: Chemomechanical coupling and motor cycles of myosin V. Biophysical Journal 100 (7), S. 1747 - 1755 (2011)
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Guo, K. K.; Xiao, W. J.; Qiu, D.: Polymerization of actin filaments coupled with adenosine triphosphate hydrolysis: brownian dynamics and theoretical analysis. The Journal of Chemical Physics 135 (10), 105101 (2011)
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Guskova, O. A.; Seidel, C.: Mesoscopic simulations of morphological transitions of stimuli-responsive diblock copolymer brushes. Macromolecules 44 (3), S. 671 - 682 (2011)
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Hu, J. L.; Weikl, T.; Lipowsky, R.: Vesicles with multiple membrane domains. Soft Matter 7 (13), S. 6092 - 6102 (2011)
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Hundertmark, M.; Dimova, R.; Lengefeld, J.; Seckler, R.; Hincha, D. K.: The intrinsically disordered late embryogenesis abundant protein LEA18 from Arabidopsis thaliana modulates membrane stability through binding and folding. Biochimica et Biophysica Acta: BBA 1808 (1), S. 446 - 453 (2011)
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Jégou, A.; Niedermayer, T.; Lipowsky, R.; Carlier, M.-F.; Romet-Lemonne, G.: Observation of Individual Actin Filaments Reveals that ATP Hydrolysis is a Random Mechanism. Observation of Individual Actin Filaments Reveals that ATP Hydrolysis is a Random Mechanism 100 (3 Suppl 1,2), S. 33a - 34a (2011)
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Jegou, A.; Niedermayer, T.; Orban, J.; Didry, D.; Lipowsky, R.; Carlier, M. F.; Romet-Lemonne, G.: Individual actin filaments in a microfluidic flow reveal the mechanism of ATP hydrolysis and give insight into the properties of profilin. PLoS Biology 9 (9), e1001161 (2011)
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Kar, P.; Lipowsky, R.; Knecht, V.: Importance of polar solvation for cross-reactivity of antibody and its variants with steroids. The Journal of Physical Chemistry B 115 (23), S. 7661 - 7669 (2011)
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Klasczyk, B.; Knecht, V.: Validating affinities for ion-lipid association from simulation against experiment. Journal of Physical Chemistry A 115 (38), S. 10587 - 10595 (2011)
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Klumpp, S.: Growth-rate dependence reveals design principles of plasmid copy number control. PLoS One 6 (5), e20403 (2011)
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Klumpp, S.: Pausing and backtracking in transcription under dense traffic conditions. Journal of Statistical Physics 142 (6), S. 1252 - 1267 (2011)
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Krobath, H.; Rózycki, B.; Lipowsky, R.; Weikl, T. R.: Line tension and stability of domains in cell-adhesion zones mediated by long and short receptor-ligand complexes. PLoS One 6 (8), e23284 (2011)
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Kusumaatmaja, H.; Lipowsky, R.: Droplet-induced budding transitions of membranes. Soft Matter 7 (15), S. 6914 - 6919 (2011)
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Lei, W.; Portehault, D.; Dimova, R.; Antonietti, M.: Boron carbon nitride nanostructures from salt: tunable water-soluble phosphors. Journal of the American Chemical Society 133 (18), S. 7121 - 7127 (2011)
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Li, Y. H.; Lipowsky, R.; Dimova, R.: Membrane nanotubes induced by aqueous phase separation and stabilized by spontaneous curvature. Proceedings of the National Academy of Sciences of the United States of America 108 (12), S. 4731 - 4736 (2011)
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Menche, J.; Valleriani, A.; Lipowsky, R.: Sequences of phase transitions in Ising models on correlated networks. Physical Review E 83 (6), 061129 (2011)
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Mertins, O.; Dimova, R.: Binding of chitosan to phospholipid vesicles studied with isothermal titration calorimetry. Langmuir 27 (9), S. 5506 - 5515 (2011)
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Nagar, A.; Valleriani, A.; Lipowsky, R.: Translation by ribosomes with mRNA degradation: exclusion processes on aging tracks. Journal of Statistical Physics 145 (5), S. 1385 - 1404 (2011)
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Rading, M. M.; Engel, T. A.; Lipowsky, R.; Valleriani, A.: Stationary size distributions of growing cells with binary and multiple cell division. Journal of Statistical Physics 145 (1), S. 1 - 22 (2011)
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Sahoo, M.; Klumpp, S.: Transcriptional proofreading in dense RNA polymerase traffic. EPL 96 (6), 60004 (2011)
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Sahoo, M.; Lahiri, S.; Jayannavar, A. M.: Fluctuation theorems and atypical trajectories. Journal of Physics A 44 (20), 205001 (2011)
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Schmoller, K. M.; Niedermayer, T.; Zensen, C.; Wurm, C.; Bausch, A. R.: Fragmentation is crucial for the steady-state dynamics of actin filaments. Biophysical Journal 101 (4), S. 803 - 808 (2011)
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Schuster, M.; Lipowsky, R.; Assmann, M. A.; Lenz, P.; Steinberg, G.: Transient binding of dynein controls bidirectional long-range motility of early endosomes. Proceedings of the National Academy of Sciences of the United States of America 108 (9), S. 3618 - 3623 (2011)
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Shchelokovskyy, P.; Tristram-Nagle, S.; Dimova, R.: Effect of the HIV-1 fusion peptide on the mechanical properties and leaflet coupling of lipid bilayers. New Journal of Physics 13, 025004 (2011)
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Valleriani, A.; Zhang, G.; Nagar, A.; Ignatova, Z.; Lipowsky, R.: Length-dependent translation of messenger RNA by ribosomes. Physical Review E 83 (4), 042903 (2011)
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von Deuster, C. I. E.; Knecht, V.: Competing interactions for antimicrobial selectivity based on charge complementarity. Biochimica et Biophysica Acta-Biomembranes 1808 (12), S. 2867 - 2876 (2011)
2010
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Czech, A.; Fedyunin, I.; Zhang, G.; Ignatova, Z.: Silent mutations in sight: co-variations in tRNA abundance as a key to unravel consequences of silent mutations. Molecular BioSystems 6 (10), S. 1767 - 1772 (2010)
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Gracià, R. S.; Bezlyepkina, N.; Knorr, R. L.; Lipowsky, R.; Dimova, R.: Effect of cholesterol on the rigidity of saturated and unsaturated membranes: fluctuation and electrodeformation analysis of giant vesicles. Soft Matter 6 (7), S. 1472 - 1482 (2010)
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Guo, K. K.; Shillcock, J.; Lipowsky, R.: Treadmilling of actin filaments via Brownian dynamics simulations. The Journal of Chemical Physics 133 (15), 155105 (2010)
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Gutjahr, P.; Lipowsky, R.; Kierfeld, J.: Semiflexible polymer rings on topographically and chemically structured surfaces. Soft Matter 6 (21), S. 5461 - 5475 (2010)
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Hausmann, R.; Kuppe, C.; Egger, H.; Schweda, F.; Knecht, V.; Elger, M.; Menzel, S.; Somers, D.; Braun, G.; Fuss, A. et al.; Uhlig, S.; Kriz, W.; Tanner, G.; Floege, J.; Moeller, M. J.: Electrical forces determine glomerular permeability. Journal of the American Society of Nephrology 21 (12), S. 2053 - 2058 (2010)
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Katsir, Y.; Shapira, Y.; Mastai, Y.; Dimova, R.; Ben-Jacob, E.: Entropic effects and slow kinetics revealed in titrations of D2O-H2O Solutions with Different D/H Ratios. The Journal of Physical Chemistry B 114 (17), S. 5755 - 5763 (2010)
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Kierfeld, J.; Baczynski, K.; Gutjahr, P.; Kühne, T.; Lipowsky, R.: Modelling semiflexible polymers: shape analysis, buckling instabilities, and force generation. Soft Matter 6 (22), S. 5764 - 5769 (2010)
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Kittner, M.; Knecht, V.: Disordered versus fibril-like amyloid beta (25-35) dimers in water: structure and thermodynamics. The Journal of Physical Chemistry B 114 (46), S. 15288 - 15295 (2010)
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Klasczyk, B.; Knecht, V.: Kirkwood-Buff derived force field for alkali chlorides in simple point charge water. The Journal of Chemical Physics 132 (2), 024109 (2010)
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Klasczyk, B.; Knecht, V.; Lipowsky, R.; Dimova, R.: Interactions of alkali metal chlorides with phosphatidylcholine vesicles. Langmuir 26 (24), S. 18951 - 18958 (2010)
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Klasczyk, B.; Panzner, S.; Lipowsky, R.; Knecht, V.: Fusion-relevant changes in lipid shape of hydrated cholesterol hemisuccinate induced by pH and counterion species. The Journal of Physical Chemistry B 114 (46), S. 14941 - 14946 (2010)
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Klumpp, S.: Immer ans Ganze gekoppelt - wie Zellwachstum genetische Schaltkreise beeinflusst. GIT Labor-Fachzeitschrift 54 (5), S. 400 - 401 (2010)
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Knecht, V.: Model amyloid peptide B18 monomer and dimer studied by replica exchange molecular dynamics simulations. The Journal of Physical Chemistry B 114 (39), S. 12701 - 12707 (2010)
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Knecht, V.; Levine, Z. A.; Vernier, P. T.: Electrophoresis of neutral oil in water. Journal of Colloid and Interface Science 352 (2), S. 223 - 231 (2010)
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Knorr, R. L.; Staykova, M.; Gracià, R. S.; Dimova, R.: Wrinkling and electroporation of giant vesicles in the gel phase. Soft Matter 6 (9), S. 1990 - 1996 (2010)
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Kusumaatmaja, H.; Lipowsky, R.: Equilibrium morphologies and effective spring constants of capillary bridges. Langmuir 26 (24), S. 18734 - 18741 (2010)
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Li, X.; Lipowsky, R.; Kierfeld, J.: Coupling of actin hydrolysis and polymerization: reduced description with two nucleotide states. EPL 89 (3), 38010 (2010)
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Liepelt, S.; Lipowsky, R.: Impact of slip cycles on the operation modes and efficiency of molecular motors. Journal of Statistical Physics 141 (1), S. 1 - 16 (2010)
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Lipowsky, R.; Beeg, J.; Dimova, R.; Klumpp, S.; Müller, M. J. I.: Cooperative behavior of molecular motors: cargo transport and traffic phenomena. Physica E: Low-Dimensional Systems And Nanostructures 42 (3), S. 649 - 661 (2010)
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Menche, J.; Valleriani, A.; Lipowsky, R.: Asymptotic properties of degree-correlated scale-free networks. Physical Review E 81 (4), 046103 (2010)
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Menche, J.; Valleriani, A.; Lipowsky, R.: Dynamical processes on dissortative scale-free networks. EPL 89 (1), 18002 (2010)
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Mognetti, B. M.; Kusumaatmaja, H.; Yeomans, J. M.: Drop dynamics on hydrophobic and superhydrophobic surfaces. Faraday Discussions 146, S. 153 - 165 (2010)
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Müller, M. J. I.; Klumpp, S.; Lipowsky, R.: Bidirectional transport by molecular motors: enhanced processivity and response to external forces. Biophysical Journal 98 (11), S. 2610 - 2618 (2010)
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Pati, A. K.; Sahoo, M.; Pradhan, B.: Quantum work relations under trial Hamiltonians. Physical Review E 82 (3), 031112 (2010)
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Portet, T.; Dimova, R.: A new method for measuring edge tensions and stability of lipid bilayers: effect of membrane composition. Biophysical Journal 99 (10), S. 3264 - 3273 (2010)
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Rózycki, B.; Lipowsky, R.; Weikl, T. R.: Segregation of receptor-ligand complexes in cell adhesion zones: phase diagrams and the role of thermal membrane roughness. New Journal of Physics 12, 095003 (2010)
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