Publikationen

Zeitschriftenartikel (42)

2013
Zeitschriftenartikel
Awasthi, N.; Ritschel, T.; Lipowsky, R.; Knecht, V.: Standard Gibbs energies of formation and equilibrium constants from ab-initio calculations: covalent dimerization of NO2 and synthesis of NH3. The Journal of Chemical Thermodynamics 62, S. 211 - 221 (2013)
Zeitschriftenartikel
Bahrami, A. H.: Orientational changes and impaired internalization of ellipsoidal nanoparticles by vesicle membranes. Soft Matter 9 (36), S. 8642 - 8646 (2013)
Zeitschriftenartikel
Berger, F.; Keller, C.; Lipowsky, R.; Klumpp, S.: Elastic coupling effects in cooperative transport by a pair of molecular motors. Cellular and Molecular Bioengineering 6 (1 SI), S. 48 - 64 (2013)
Zeitschriftenartikel
Bezlyepkina, N.; Gracia, R. S.; Shchelokovskyy, P.; Lipowsky, R.; Dimova, R.: Phase diagram and tie-line determination for the ternary mixture DOPC/eSM/cholesterol. Biophysical Journal 104 (7), S. 1456 - 1464 (2013)
Zeitschriftenartikel
Bierbaum, V.; Lipowsky, R.: Dwell time distributions of the molecular motor myosin V. PLoS One 8 (2), e55366 (2013)
Zeitschriftenartikel
Cupelli, C.; Borchardt, T.; Steiner, T.; Paust, N.; Zengerle, R.; Santer, M.: Leukocyte enrichment based on a modified pinched flow fractionation approach. Microfluidics and Nanofluidics 14 (3-4), S. 551 - 563 (2013)
Zeitschriftenartikel
Deneke, C.; Lipowsky, R.; Valleriani, A.: Effect of ribosome shielding on mRNA stability. Physical Biology 10 (4), 046008 (2013)
Zeitschriftenartikel
Deneke, C.; Lipowsky, R.; Valleriani, A.: Complex degradation processes lead to non-exponential decay patterns and age-dependent decay rates of messenger RNA. PLoS One 8 (2), e55442 (2013)
Zeitschriftenartikel
Dong, J. J.; Klumpp, S.; Zia, R. K. P.: Mass transport perspective on an accelerated exclusion process: Analysis of augmented current and unit-velocity phases. Physical Review E 87 (2), 022146 (2013)
Zeitschriftenartikel
Faber, M.; Klumpp, S.: Kinetic Monte Carlo approach to RNA folding dynamics using structure-based models. PHYSICAL REVIEW E 88 (5), 052701 (2013)
Zeitschriftenartikel
Grafmüller, A.; Lipowsky, R.; Knecht, V.: Effect of tension and curvature on the chemical potential of lipids in lipid aggregates. Physical Chemistry Chemical Physics 15 (3), S. 876 - 881 (2013)
Zeitschriftenartikel
Grafmüller, A.; Noya, E. G.; Voth, G. A.: Nucleotide-dependent lateral and longitudinal interactions in microtubules. Journal of Molecular Biology (London) 425 (12), S. 2232 - 2246 (2013)
Zeitschriftenartikel
Hintsche, M.; Klumpp, S.: Dilution and the theoretical description of growth-rate dependent gene expression. Journal of Biological Engineering 7 (1), 22 (2013)
Zeitschriftenartikel
Hu, J. L.; Lipowsky, R.; Weikl, T. R.: Binding constants of membrane-anchored receptors and ligands depend strongly on the nanoscale roughness of membranes. Proceedings of the National Academy of Sciences of the United States of America 110 (38), S. 15283 - 15288 (2013)
Zeitschriftenartikel
Irudayam, S. J.; Pobandt, T.; Berkowitz, M. L.: Free energy barrier for melittin reorientation from a membrane-bound state to a transmembrane state. The Journal of Physical Chemistry B 117 (43), S. 13457 - 13463 (2013)
Zeitschriftenartikel
Jégou, A.; Niedermayer, T.; Lipowsky, R.; Carlier, M.-F.; Romet-Lemonne, G.: On Phosphate Release in Actin Filaments. Biophysical Journal 104 (12), S. 2778 - 2779 (2013)
Zeitschriftenartikel
Kang, Y.; Barbiz, S.; Lipowsky, R.; Santer, M.: Conformational insights into recognition mechanism of O-antigen polysaccharides by tailspike protein. European Biophysics Journal with Biophysics Letters 42 (Suppl. 1), S. S112 - S112 (2013)
Zeitschriftenartikel
Kar, P.; Lipowsky, R.; Knecht, V.: Importance of polar solvation and configurational entropy for design of antiretroviral drugs targeting HIV-1 protease. The Journal of Physical Chemistry B 117 (19), S. 5793 - 5805 (2013)
Zeitschriftenartikel
Keller, C.; Berger, F.; Liepelt, S.; Lipowsky, R.: Network complexity and parametric simplicity for cargo transport by two molecular motors. Journal of Statistical Physics 150 (2), S. 205 - 234 (2013)
Zeitschriftenartikel
Klumpp, S.; Scott, M.; Pedersen, S.; Hwa, T.: Molecular crowding limits translation and cell growth. Proceedings of the National Academy of Sciences of the United States of America 110 (42), S. 16754 - 16759 (2013)
Zeitschriftenartikel
Klumpp, S.: A Superresolution Census of RNA Polymerase. Biophysical Journal 105 (12), S. 2613 - 2614 (2013)
Zeitschriftenartikel
Knecht, V.; Klasczyk, B.: Specific binding of chloride ions to lipid vesicles and implications at molecular scale. Biophysical Journal 104 (4), S. 818 - 824 (2013)
Zeitschriftenartikel
Knecht, V.; Klasczyk, B.; Dimova, R.: Macro- versus microscopic view on the electrokinetics of a water-membrane interface. Langmuir 29 (25), S. 7939 - 7948 (2013)
Zeitschriftenartikel
Li, X.; Lipowsky, R.; Kierfeld, J.: Bifurcation of velocity distributions in cooperative transport of filaments by fast and slow motors. Biophysical Journal 104 (3), S. 666 - 676 (2013)
Zeitschriftenartikel
Lipowsky, R.: Spontaneous tubulation of membranes and vesicles reveals membrane tension generated by spontaneous curvature. Faraday Discussions 161, S. 305 - 331 (2013)
Zeitschriftenartikel
Lipowsky, R.; Rouhiparkouhi, T.; Discher, D. E.; Weikl, T. R.: Domain formation in cholesterol-phospholipid membranes exposed to adhesive surfaces or environments. Soft Matter 9 (35), S. 8438 - 8453 (2013)
Zeitschriftenartikel
Mertins, O.; Dimova, R.: Insights on the interactions of chitosan with phospholipid vesicles. Part I: effect of polymer deprotonation. Langmuir 29 (47), S. 14545 - 14551 (2013)
Zeitschriftenartikel
Mertins, O.; Dimova, R.: insights on the interactions of chitosan with phospholipid vesicles. Part II: membrane stiffening and pore formation. Langmuir 29 (47), S. 14552 - 14559 (2013)
Zeitschriftenartikel
Minh Dang, T.; Vila Verde, A.; Van Nguyen, D.; Bolhuis, P. G.; Schall, P.: Temperature-sensitive colloidal phase behavior induced by critical Casimir forces. JOURNAL OF CHEMICAL PHYSICS 139 (9), 094903 (2013)
Zeitschriftenartikel
Neuman, B. W.; Kiss, G.; Al-Mulla, H. M. N.; Dokland, T.; Buchmeier, M. J.; Weikl, T.; Schley, D.: Direct observation of membrane insertion by enveloped virus matrix proteins by phosphate displacement. PLoS One 8 (2), e57916 (2013)
Zeitschriftenartikel
Patra, P.; Klumpp, S.: Population dynamics of bacterial persistence. PLoS One 8 (5), e62814 (2013)
Zeitschriftenartikel
Perez-Hernandez, G.; Paul, F.; Giorgino, T.; De Fabritiis, G.; Noe, F.: Identification of slow molecular order parameters for Markov model construction. The Journal of Chemical Physics 139 (1), 015102 (2013)
Zeitschriftenartikel
Rouhiparkouhi, T.; Weikl, T. R.; Discher, D. E.; Lipowsky, R.: Adhesion-Induced Phase Behavior of Two-Component Membranes and Vesicles. International Journal of Molecular Sciences 14 (1), S. 2203 - 2229 (2013)
Zeitschriftenartikel
Sahoo, M.; Klumpp, S.: Backtracking dynamics of RNA polymerase: pausing and error correction. Journal of Physics: Condensed Matter 25 (37), 374104 (2013)
Zeitschriftenartikel
Shapovalov, V. L.; Möhwald, H.; Konovalov, O. V.; Knecht, V.: Negligible water surface charge determined using Kelvin probe and total reflection X-ray fluorescence techniques. Physical Chemistry Chemical Physics 15 (33), S. 13991 - 13998 (2013)
Zeitschriftenartikel
Smirnova, Y. G.; Aeffner, S.; Risselada, H. J.; Salditt, T.; Marrink, S. J.; Müller, M.; Knecht, V.: Interbilayer repulsion forces between tension-free lipid bilayers from simulation. Soft Matter 9 (45), S. 10705 - 10718 (2013)
Zeitschriftenartikel
Sosale, N.; Rouhi, T.; Lipowsky, R.; Discher, D. E.: 'Marker of self', CD47, modulates mechanical forces imposed by macrophages during phagocytosis. Biophysical Journal 104 (2 Suppl. 1), S. 480A - 480A (2013)
Zeitschriftenartikel
Suraniti, E.; Kanoufi, F.; Gosse, C.; Zhao, X.; Dimova, R.; Pouligny, B.; Sojic, N.: Electrochemical Detection of Single Microbeads Manipulated by Optical Tweezers in the Vicinity of Ultramicroelectrodes. Analytical Chemistry 85 (19), S. 8902 - 8909 (2013)
Zeitschriftenartikel
Tong, Y.; Vila Verde, A.; Campen, K.: The Free OD at the Air/D2O Interface is Structurally and Dynamically Heterogeneous. The Journal of Physical Chemistry B 117 (39), S. 11753 - 11764 (2013)
Zeitschriftenartikel
Vach, P. J.; Brun, N.; Bennet, M.; Bertinetti, L.; Widdrat, M.; Baumgartner, J.; Klumpp, S.; Fratzl, P.; Faivre, D.: Selecting for function: solution synthesis of magnetic nanopropellers. Nano Letters 13 (11), S. 5373 - 5378 (2013)
Zeitschriftenartikel
Vila Verde, A.; Lipowsky, R.: Cooperative slowdown of water rotation near densely charged ions is intense but short-ranged. The Journal of Physical Chemistry B 117, S. 10556 - 10566 (2013)
Zeitschriftenartikel
Weikl, T. R.; Hemmateenejad, B.: How conformational changes can affect catalysis, inhibition and drug resistance of enzymes with induced-fit binding mechanism such as the HIV-1 protease. Biochimica et Biophysica Acta: Proteins and Proteomics 1834 (5), S. 867 - 873 (2013)

Konferenzbeitrag (3)

2013
Konferenzbeitrag
Gomez, D.; Marathe, R.; Bierbaum, V.; Klumpp, S.: Modeling Stochastic Gene Expression in Growing Cells. Biophysical Journal (Annual Meeting Abstracts) 104 (2 Suppl. 1), 2832-Plat, S. 551A - 552A (2013)
Konferenzbeitrag
Hörnke, M.; Knecht, V.; Koksch, B.; Brezesinski, G.: Amyloid aggregation triggers: hydrophobic surfaces, metal ions, intramolecular interactions, lipids. European Biophysics Journal with Biophysics Letters 42 (Suppl. 1), P-115, S. S65 - S65 (2013)
Konferenzbeitrag
Lira, R. B.; Dimova, R.; Riske, K. A.: Giant unilamellar vesicles from films of agarose and lipids display hindered mechanical response. European Biophysics Journal with Biophysics Letters 42 (Suppl. 1), P-345, S. S125 - S125 (2013)

Meeting Abstract (3)

2013
Meeting Abstract
Berger, F.; Keller, C.; Klumpp, S.; Lipowsky, R.: Distinct transport regimes of two elastically coupled molecular motors. In Biophysical Journal, 104 (2 Suppl. 1), S. 325A - 325A. Cell Press, Cambridge, Mass. (2013)
Meeting Abstract
Niedermayer, T.; Jegou, A.; Carlier, M. F.; Romet-Lemonne, G.; Lipowsky, R.: Interplay of stochastic processes during actin depolymerization. In Biophysical Journal, 104 (2 Suppl. 1), S. 645A - 645A. Cell Press, Cambridge, Mass. (2013)
Meeting Abstract
Rudorf, S.; Valleriani, A.; Lipowsky, R.: Dependence of Protein Synthesis on TRNA Concentrations. In Biophysical Journal, 104 (2 Suppl. 1), S. 257A - 257A. Cell Press, Cambridge, Mass. (2013)

Hochschulschrift - Doktorarbeit (2)

2013
Hochschulschrift - Doktorarbeit
Bahrami, A. H.: Vesicles interacting with nanoparticles. Dissertation, 86 S., Technische Universität, Berlin (2013)
Hochschulschrift - Doktorarbeit
Patra, P.: Population Dynamics of Bacterial Persistence. Dissertation, 118 S., Universität Potsdam, Potsdam (2013)
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